Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02899 ATGGTTGTGCTGTCGTCGGAGGATGAATTCGACGAGGAGCCCGGCGAGGTCATTAAATCGGCGCCGCCGCAGAAGGTGGGCGAAGAGAGGCAGCTCAAAGGTCTCAAGAAGAAGCTTCTCAGACACGGACACGGCTGGGAAACCCCTAACTTCAACGACTTCGTAACAGTTCACCGTGTTGGGACATTGCTCGATGGAGCTGCGTTGGGTTCTTCCACTAGAGACACGGATCAACCCTTGACGTTTACTCTTGGCAATGGTGATGTTCCTGGGTTGGACCGTGGGATTACGAGTATGAAGAAAGGGGAGGTGGCATTGTTCACATTACCTGCAGACGGTGAAGGTGATGTTTGGCGTGATTCCGACTCGGTTGTGCAGTTTGAGGTGGAACTCCTTTCGTGGATCAGAGTGGTGGATGTGTGCAAAGATGGTGGCGTTATCAAGAAAATTGTGGAGCAGGGGAGTGGGAACGACCGCCCTTCTGATCTCGATGAAGTGCTTGCTGTATTGCTCTCGGCACGCAGTGAAGATTTTGTCAGCTTATTAGTTTGTGTTGGATATTTTGCCACTGCAGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGAAGAGACACCTGAAGGAGGAGTTGAGTTTTACGTGAAGGATGATGCCTTTGGGGAGACGGGAAGAGATTCTGGAACTGGGCTCTGTCGAATCCCTCCAAATTCAGTACTGCATGCTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGCGACTCCAAGGTGCTTAAAAAGATATTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGATGCACATGTTACTGAACAAGTGATTGTTGGTCTAGATCGAGCTGTGGCAACTATGAAGAAGGGTGAGAGGGCCATTATTTCCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATCTTGCTATTGTTCCACCAGGCTCAAATGTAGTCTATGACGTTGAGATGCTGGATTTTATCAAGGAGAAAGCACCGTGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTACTATTTAAAGGTGGCAATTACCTCCGAGCAAAGAAGAAGTATGAACAGGCGGTTGATTTTCTTAGTGACGATGGATCCTTTGGGTATAGTGAGCAAAAGCAAGCTGATGCACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTAGTGGAGCAATCAAGCTATGTACGCAGGTACTTGATGTTGAATTTTGCAACGTGAAAGCTTTTTATAGACGTGCACAAGCATATATAGAAACTGGAGACTTCCTATTAGCAGCTGTAGACATCAAGAAAGCTCTTGTGGCGGACCCACAAAACAGGGAGGTACAGATAATTCAAAAGAAATTGAAGCAACTTCAAGCTGACAAAGACAAAAAAGATGCGAAGCTATACGAAAACATGTTTGCGTGTAAAACAAAGGACTCGTCTACGGCTATAAAGGTGAATATTGTTTAG 1560 0.4564 MVVLSSEDEFDEEPGEVIKSAPPQKVGEERQLKGLKKKLLRHGHGWETPNFNDFVTVHRVGTLLDGAALGSSTRDTDQPLTFTLGNGDVPGLDRGITSMKKGEVALFTLPADGEGDVWRDSDSVVQFEVELLSWIRVVDVCKDGGVIKKIVEQGSGNDRPSDLDEVLAVLLSARSEDFVSLLVCVGYFATAVKYQVALVDGTVVEETPEGGVEFYVKDDAFGETGRDSGTGLCRIPPNSVLHANIELVSFKPVINVTGDSKVLKKILKEGEGAFTANEDAHVTEQVIVGLDRAVATMKKGERAIISIHPDYAFGNVEVRRDLAIVPPGSNVVYDVEMLDFIKEKAPWELNSKEKIEVAGRKKEEGNVLFKGGNYLRAKKKYEQAVDFLSDDGSFGYSEQKQADALRVSCWLNGAACSLKLNDFSGAIKLCTQVLDVEFCNVKAFYRRAQAYIETGDFLLAAVDIKKALVADPQNREVQIIQKKLKQLQADKDKKDAKLYENMFACKTKDSSTAIKVNIV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02899 519 Gene3D - 28 137 IPR046357 GO:0003755
Vimu1g02899 519 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 274 341 IPR001179 GO:0003755
Vimu1g02899 519 Gene3D Tetratricopeptide repeat domain 347 501 IPR011990 GO:0005515
Vimu1g02899 519 SUPERFAMILY FKBP-like 257 358 - -
Vimu1g02899 519 SUPERFAMILY FKBP-like 8 150 - -
Vimu1g02899 519 ProSiteProfiles TPR repeat profile. 441 474 IPR019734 GO:0005515
Vimu1g02899 519 FunFam Peptidylprolyl isomerase 346 501 - -
Vimu1g02899 519 SMART tpr_5 407 440 IPR019734 GO:0005515
Vimu1g02899 519 SMART tpr_5 441 474 IPR019734 GO:0005515
Vimu1g02899 519 SMART tpr_5 358 391 IPR019734 GO:0005515
Vimu1g02899 519 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 112 IPR001179 GO:0003755
Vimu1g02899 519 Coils Coil 477 497 - -
Vimu1g02899 519 PANTHER PEPTIDYLPROLYL ISOMERASE 33 133 - -
Vimu1g02899 519 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 112 IPR001179 GO:0003755
Vimu1g02899 519 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 338 IPR001179 GO:0003755
Vimu1g02899 519 Gene3D - 141 255 IPR046357 GO:0003755
Vimu1g02899 519 Gene3D - 279 346 IPR046357 GO:0003755
Vimu1g02899 519 SUPERFAMILY TPR-like 352 503 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02899 Vimu-Chr1 41404147 41413696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02899 25 504 Calmodulin-binding Proteins AT3G25230 46.606 1.53e-144 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02899 K09571 - gmx:100798382 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02899 1 41404147 41413696 Vimu1g02899 1 41404147 41413696 ECH