Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02886 ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGACAGCAGTTGCGCCTTTGGTTCTTCTCTTGCTTCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGACTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCATCAGAGAAACTCTCTGCTGAGATCTAATGTCACCCTTTTCTCTGAGGGCCACAACCAACCACAAATGTTGAGTTTCTCTTCACCAAAATCAGAGCCTTTGATGGTGGACAAGGCCTCCTTAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGTACCGGTGGAGGGTCTTTTCATGGAAATACATGAGTGGTCTCTGTTTGTGAGTCATGTCACAAGAAATTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAACCGGCCTCCTCAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTCCTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCCGGCGGCAACAACAACAACAACACCTTTGCACACAACAATGTGCACCACCCTCTTCCATCTCATTCCTCTCCAGCCAACACCATCAATAGGATGTTTATGAGTAGCAAAGAGAACAGTAACAACGCTAGTGAGAGGATGCAGGATGGCCCTGCGCTTCCCATGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACAGCAACTCCCATATGATGAATCTTCCTCAAGGAACAACAATGAGTTTGGACTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCTCTTAGGCACTTCATCGATGACTCTCCAAAACCGCAGTCTCATCATCACCATCACCATCACCGTTCTTCTGTCTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTATCAATCTCCATACCGATATCATCCTCAGATTTCATGTCATTCACTACCTCCTCACCCTCTAATGAGAAACTCACACTGTCACCACTAAGGCTTTCAAGGGAGTTAGACCCTATTCAAATGGGGTTGGGAGTGGGAAGTGGTGCTCCCAATGAGTCAAACACTAGGCAAGCGAATTGGATTCCAATCACTTGGGAGAGTTCTATGGGTGGCCCTCTTGGTGAGGTTTTGAACCTGAGTAGTACTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCCCTCAACCTCATGAAAGATGGGTGGGACAACAGTCCTCCACTAGGGTCATCTCCAAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGAGAACAACAACATCAAAGAAGGTGCCAGTGCCACCACACTGTGCAATGCCTTAAGGCACGATGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGGAGAAGAAAAGAAAAGAACTTTGTTCTTTTGACTTTAATCATTAG 1977 0.4714 MDLGVVGLEGLVGSDSSCAFGSSLASDPETKHKWYGSGVLKQERSGTASEDEWRTSKVPKTDDNMSAASKAMLFHQRNSLLRSNVTLFSEGHNQPQMLSFSSPKSEPLMVDKASLNATLPFSYHQLSSYSRNTVPVEGLFMEIHEWSLFVSHVTRNSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSTGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTTPPNASSNSIVVPGGNNNNNTFAHNNVHHPLPSHSSPANTINRMFMSSKENSNNASERMQDGPALPMVPPTLELKPKDPFMIHKQQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLRLSRELDPIQMGLGVGSGAPNESNTRQANWIPITWESSMGGPLGEVLNLSSTNNNSNGSDHCGKNTSALNLMKDGWDNSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNIKEGASATTLCNALRHDGRKKKKKKKKRKEKKRKELCSFDFNH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02886 658 MobiDBLite consensus disorder prediction 548 658 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 45 59 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 631 647 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 582 622 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 388 429 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 548 568 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 286 360 - -
Vimu1g02886 658 PANTHER GROWTH-REGULATING FACTOR 5 91 490 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu1g02886 658 MobiDBLite consensus disorder prediction 43 62 - -
Vimu1g02886 658 Pfam WRC 242 284 IPR014977 -
Vimu1g02886 658 ProSiteProfiles WRC domain profile. 241 285 IPR014977 -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 430 447 - -
Vimu1g02886 658 MobiDBLite consensus disorder prediction 388 462 - -
Vimu1g02886 658 Pfam QLQ 172 206 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu1g02886 658 MobiDBLite consensus disorder prediction 268 376 - -
Vimu1g02886 658 ProSiteProfiles QLQ domain profile. 172 207 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu1g02886 658 SMART QLQ_2 171 207 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02886 Vimu-Chr1 41253520 41257661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02886 41 619 GRF Transcription Factor Family AT2G22840 41.919 4.75e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu1g02886 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02886 - - gmx:100818860 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02886 1 41253520 41257661 Vimu1g02886 1 41253520 41257661 ECH