Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02882 ATGGTTTGGAAGGAAGATTTGGTGGGGTCCACAGTTGATGAACAGTGGCTGAGGTTGATGGAGGATGATCTTGGTGATAGTAGCAGTAGCTCCTGGGGTGGTGGTGGTGGTGTTGTGTTTTGTTGTGATCTATTAAACAGTAGATTTGATCTTGGTTTAGGGTTTTTGAAGGAACAGGTAAAATACGAAGCTGGGACTGTTGAGTTTGTTCAGATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGGTCTCAGTGTTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCTGATGTTTCTAACCCTTTTCTTCCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATTACCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTCCCCAAGGTTCATTCCTATGCAAGCAGGGGCTTCTCAGAAATGGTTGCTGCTGCCTCTTTTATCCAGCATGGGTCTGCTGATGTGGCTAACTCAGGGTACCCACCACATTATAATCCGATCAAGGAGACTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAACAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCTACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATGTGAGTGAAGGCCTTAACCTTCTTGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGGTAAAAAGACTAAACATCTCTGAACATGTTACACTCTGA 1443 0.4456 MVWKEDLVGSTVDEQWLRLMEDDLGDSSSSSWGGGGGVVFCCDLLNSRFDLGLGFLKEQVKYEAGTVEFVQMGGQENAMGFQHGNENILTCPSSGLSVANVNVSEMAISSVSMAKPSDVSNPFLPSSAWDPLVSLSQAQTFGGSSMVSHTDFANANSSYPLVLENQGITNTSHLVQYMSDSNLGGMVPKVHSYASRGFSEMVAAASFIQHGSADVANSGYPPHYNPIKETQINGEQSQVEDSIPEEEAPGSGPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDVSEGLNLLGHGISAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQVKRLNISEHVTL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02882 480 Pfam Helix-loop-helix DNA-binding domain 343 391 IPR011598 GO:0046983
Vimu1g02882 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 390 IPR011598 GO:0046983
Vimu1g02882 480 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 236 448 IPR024097 GO:0006355
Vimu1g02882 480 SMART finulus 346 396 IPR011598 GO:0046983
Vimu1g02882 480 MobiDBLite consensus disorder prediction 304 327 - -
Vimu1g02882 480 MobiDBLite consensus disorder prediction 278 303 - -
Vimu1g02882 480 MobiDBLite consensus disorder prediction 233 330 - -
Vimu1g02882 480 FunFam Basic helix-loop-helix transcription factor 337 409 - -
Vimu1g02882 480 Gene3D - 337 411 IPR036638 GO:0046983
Vimu1g02882 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 408 IPR036638 GO:0046983
Vimu1g02882 480 CDD bHLH_AtBPE_like 330 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02882 Vimu-Chr1 41159478 41163307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02882 72 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.594 1.34e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g02882 HLH 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02882 - - gmx:100801930 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02882 1 41159478 41163307 Vimu1g02882 1 41159478 41163307 ECH