Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02879 ATGCGGCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGCCTATTCTCTGAAGGACCTGTTTCTTTACTTTCTGGATTAAACCCTCGTCCTTTGAGTTTGGTTCTCCATTTCTTTGCCGTTGCAATATATGGTGTTGGCCGTTTATTATTACCGTTTCCTTCACCTAAGAGAATATGGATTGGGGCCCGATTAATATCTGGTGCATCTGGAATCATCTTCCCCATAATAAAGGCTGAAGGGATTCGGCAAATGTTTTTCCCTGCGACTGTTCCAGCTTATTACAGAGCTCCCCCGGTTGGACAATAG 306 0.4412 MRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRAPPVGQ 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02879 101 Pfam Squalene epoxidase 1 59 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vimu1g02879 101 PANTHER SQUALENE MONOOXYGENASE 1 98 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02879 Vimu-Chr1 41126447 41132428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02879 1 101 Miscellaneous Gene Families AT1G58440 82.353 5.64e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02879 K00511 - gmx:100804406 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02879 1 41126447 41132428 Vimu1g02879 1 41126447 41132428 ECH
Vimu1g02879 1 41126447 41132428 Vimu10g03194 10 42441961 42445430 PCT