Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02878 ATGAACAAAGACGAAAACGATCGGAACGAAAAGAAAGCGAATGATATCAAGCTTTGGGGAGTTTTCCTCTTTGGATTACTCGGCGCCGCCGTCACTGCCTTCTCCCTGTCCAGGTCGCAGTCAAGAGGAGCGAGTGGCAGTTCTTTTCGATCATCATTCCAAGAAGAAGCATGGAAGAGGTACAATAAACGACTGCAAGAAGAGTATGAGGAGGAGGTGGAGAGGGTGGAACGTATAAAGCGCATGCAAAGTGTGTTTAATAGAGAAAGGGATAAGCGTAGAAGAAGCTACGAGAGCTGGAGGGGAAGTGGTGGTGGTGCAGATCATCAACATTTTCAAAGAGATGATTGGTATTGGAAGGCCGAAGAATCCTTCAGAGAGCACCAAGCTCCTTACGGCCAGAAGGTTGGTGATGGAGATGGCTCGTTGAAGGTTCAAACTATGCAAAGAAGAAAGGGATTCGCGATTAGGGTTCCATGGAGATTTGGAGATTTAGGTTTTTGGTGCGAAGAGAAGAAAGAGGAAGGTGCAGTGGCCCGCGAGGGTGATGTCATGATCTGGTGGAGAAGACGAACATGGTTGATGCACGAGGAAGCACAAAGGAGATCGCATTTAGGGTTTTTGGGCAGTGTGATTTGGTGGTTCACGATAATGGTGGGGCATGGAGGAGATGCTCTCGGTGGTCTCGCGATTGGGTTCACATTCCCTCTGGTTCTGTTTCTGGGTTTCCACTGTTTCTGTGGTTACTTGCAGGTCAAAGGATTGCAGAAGGTTGAACGCCATGGTGACTTCGTGATTTTCGGCACGGTGGATGTTGGTGGCGCATGGTTGCCGGCGGTGTGGTTTAGAACAACACCCTATACAGATGCCGAGATTGAGACAGCATTTAGAACCAAGGCAATGCAGTATCATCCTGACCAGAACCAGGATAATAGAGAGGCTTCTGAGGCCAAGTTCAAAGAAGTAATGTGTTCATATGAAGCCATACAAAAAGAAAGGAAGAACCAGAATCTGTAA 1017 0.4769 MNKDENDRNEKKANDIKLWGVFLFGLLGAAVTAFSLSRSQSRGASGSSFRSSFQEEAWKRYNKRLQEEYEEEVERVERIKRMQSVFNRERDKRRRSYESWRGSGGGADHQHFQRDDWYWKAEESFREHQAPYGQKVGDGDGSLKVQTMQRRKGFAIRVPWRFGDLGFWCEEKKEEGAVAREGDVMIWWRRRTWLMHEEAQRRSHLGFLGSVIWWFTIMVGHGGDALGGLAIGFTFPLVLFLGFHCFCGYLQVKGLQKVERHGDFVIFGTVDVGGAWLPAVWFRTTPYTDAEIETAFRTKAMQYHPDQNQDNREASEAKFKEVMCSYEAIQKERKNQNL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02878 338 ProSiteProfiles dnaJ domain profile. 262 334 IPR001623 -
Vimu1g02878 338 PRINTS DnaJ domain signature 296 311 IPR001623 -
Vimu1g02878 338 PRINTS DnaJ domain signature 314 334 IPR001623 -
Vimu1g02878 338 SMART dnaj_3 284 334 IPR001623 -
Vimu1g02878 338 Pfam DnaJ domain 287 336 IPR001623 -
Vimu1g02878 338 CDD DnaJ 288 322 IPR001623 -
Vimu1g02878 338 SUPERFAMILY Chaperone J-domain 287 336 IPR036869 -
Vimu1g02878 338 Gene3D DnaJ domain 284 333 IPR036869 -
Vimu1g02878 338 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 282 336 - -
Vimu1g02878 338 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02878 Vimu-Chr1 41110497 41115345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02878 - - gmx:100804936 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02878 1 41110497 41115345 Vimu1g02878 1 41110497 41115345 ECH
Vimu1g02878 1 41110497 41115345 Vimu10g03192 10 42436103 42438359 PCT