Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02869 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACTGCTCCAAGTCCAAGTCCAAGGCCTAATTTCTTGTACTCTCCCCCCAGTGGTGGAAACCATAGCCATAGCCATAGCCATAACCATCATCAGCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTCCAGTCTGATCAAGTGGCGCCACACCCTTCTGTGAAAACCGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGTACCCTTCACAACAACACGACCACCACTATGCATCACCATCCCCATCAACAAGGAGGGAGTCCTACAAGCTCCACCACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGGTTCCAGGGATACTTCAAAAGACCCTGAACTCGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAAGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGATAAATGTGAAGGGGTTGGTTCATCAGATGAGGATCAAGAGAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCTCGAGCAGAAGATCGTGAGCTTAAAAACCACTTACTGAGAAAGTACAGTGGTTATTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCCAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTTATAAACCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA 1194 0.4456 MEEYTNNNHLSENTAPSPSPRPNFLYSPPSGGNHSHSHSHNHHQHQHQHHSHHHQHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHAPIFHYPLMRGTLHNNTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKCEGVGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02869 397 MobiDBLite consensus disorder prediction 36 59 - -
Vimu1g02869 397 CDD homeodomain 311 363 IPR001356 GO:0003677
Vimu1g02869 397 SMART KNOX1_2 136 180 IPR005540 GO:0003677|GO:0005634
Vimu1g02869 397 Pfam KNOX2 domain 191 237 IPR005541 GO:0003677|GO:0005634
Vimu1g02869 397 MobiDBLite consensus disorder prediction 111 131 - -
Vimu1g02869 397 SUPERFAMILY Homeodomain-like 300 375 IPR009057 -
Vimu1g02869 397 MobiDBLite consensus disorder prediction 60 75 - -
Vimu1g02869 397 Pfam KNOX1 domain 137 179 IPR005540 GO:0003677|GO:0005634
Vimu1g02869 397 Pfam ELK domain 279 300 IPR005539 GO:0003677
Vimu1g02869 397 SMART HOX_1 301 366 IPR001356 GO:0003677
Vimu1g02869 397 MobiDBLite consensus disorder prediction 248 276 - -
Vimu1g02869 397 ProSitePatterns 'Homeobox' domain signature. 337 360 IPR017970 GO:0000981|GO:0006355
Vimu1g02869 397 Gene3D - 304 366 - -
Vimu1g02869 397 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 369 - -
Vimu1g02869 397 SMART KNOX2_2 187 238 IPR005541 GO:0003677|GO:0005634
Vimu1g02869 397 FunFam Homeobox protein knotted-1-like 2 304 366 - -
Vimu1g02869 397 ProSiteProfiles ELK domain profile. 279 299 IPR005539 GO:0003677
Vimu1g02869 397 SMART ELK_2 279 300 IPR005539 GO:0003677
Vimu1g02869 397 Pfam Homeobox KN domain 319 358 IPR008422 GO:0003677|GO:0006355
Vimu1g02869 397 ProSiteProfiles 'Homeobox' domain profile. 299 362 IPR001356 GO:0003677
Vimu1g02869 397 MobiDBLite consensus disorder prediction 1 89 - -
Vimu1g02869 397 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02869 Vimu-Chr1 41011526 41016843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02869 71 397 Homeobox Transcription Factor Family AT4G08150 69.940 5.30e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu1g02869 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02869 - - vum:124822256 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02869 1 41011526 41016843 Vimu1g02869 1 41011526 41016843 ECH