Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02866 ATGAAGAGGTTCTCTGCGTGCTGCTTCACAAGCAGAATCTCTGAGTTTCACTCTCACAGGAAGCATAACCAATCTCAATCTCAGATCATGGCAGGAAACATATCTGATTCAAGTGGGAGCAAGGGTGCAAATATTTTACTTAATCATGACTTTTCTAGAGGGCTGAACTCTTGGCATCTCAATTCCTGCACTGGCTATGTAATTTCAGCTGAATCAGGTGCTCAAGGAGGACTATCGATGGAGTTGGGTGCTAATTATGCTGTTATCACTGACAGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCACTGGTTACACTTACACAGTTTTGGCTTGTGTGGGAGTATCCAGTGTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAATATCAGGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGGAGAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATCGGGTTGTATTTTACTTGGAAGGACCTGCTCCAGGAGTTGATCTGCTCATACGATCAGTAGAAATAAATTGTTCAACTCCGAATAATAATACCAAGGGCACATCATGTGTTTCAGCGGGAGATGAGAACATCATCATCAACCCGCAATTTGATGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTGTGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAATCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGTATTCAGCAAGATATCACTGGACGCGTGCAGCGCAAACTGGCTTATGAGGTCACTGCTTTAGTTAGAATTTTTGGAAACAATGTCTCTACTGCTGATGTACGGGCTACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAGTATATAGGCATTGCAAATTTGCAGGCAACAGACAAGGATTGGGTTACTCTGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTACTTAGAGGGCCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCACGCAGCTAAAACACCTCCTTCAACCCCACCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTCAAAACAGCAATCTAGCTGATGGTACCGATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAAGTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCTTAAATGGGCGGTACATCCTAGTAACTAATCGAACACAAACATGGATGGGTCCAGCCCAGATCATCACTGATAAAGTGAAACTCTTTTTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACACGTGGCATGAAATAGGAGGGTCCTTCAGAATTGAAAAACAGCCATCAAAGGTTATGATTTATGTCCAAGGTCCTGCTTCTGGTGTAGACTTAATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATACGCAAACGTGATGTTGTACTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGTTTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAAGACTTTGTTGACTTCATGGTGAAGCATTTTAACTGGGTTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACAGAGCCACAACAAGGGAACTTCAATTACAAGGATGCTGATGATCTGTTAAGCCTGTGTCAGAAGCACAATATTCAAACTCGTGGTCATTGTATCTTCTGGGATGTGGAAGGAGTGGTTCAGCAGTGGATCAAATCACTGAACAAAAACGATTTGATGACGGCTGTCCAGAACCGCCTAAACGGGCTTATGACTCGTTACAAGGGCAAGTTTAATCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGGCTAGGCAAGGATATAAGGGCCAACATGTTCAAAACTGCAAACCAGCTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAGGATGGATGTGACACCAGATCATGTCCTGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAAGGCCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTGCCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATATGTCAGAGCAGATGATCTTGAAGTTATGCTGCGTGAAGCCATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGACAATGCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTTCTAGCTCTAAAACAGGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATCTCCAAGTTGTGACCCCATCAAAGAAAATTTCTAAGACATTTGTTCTTGACAAAGGTGACACACCACTGGTGCTATCCATTGATTTATAA 2793 0.4271 MKRFSACCFTSRISEFHSHRKHNQSQSQIMAGNISDSSGSKGANILLNHDFSRGLNSWHLNSCTGYVISAESGAQGGLSMELGANYAVITDRKECWQGLEQDITDRISTGYTYTVLACVGVSSVSQGSSDVLATLKLEYQDSATSYLFIGRTSVNKDSWEKLEGTFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTPNNNTKGTSCVSAGDENIIINPQFDDGLNNWSGRGCKIVLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTLQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVTFGVNIIQNSNLADGTDGWFPLGNCTLSVKSGSPHIIPPMARDSLGPHELLNGRYILVTNRTQTWMGPAQIITDKVKLFLTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDDTWHEIGGSFRIEKQPSKVMIYVQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKRDVVLKFSGLDSGSYANTSVQVRQTQNVFPIGTCISRSNIDNEDFVDFMVKHFNWVVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHNIQTRGHCIFWDVEGVVQQWIKSLNKNDLMTAVQNRLNGLMTRYKGKFNHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNLQVVTPSKKISKTFVLDKGDTPLVLSIDL 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02866 930 PANTHER GLYCOSYL HYDROLASE 373 922 IPR044846 GO:0004553|GO:0005975
Vimu1g02866 930 Gene3D - 385 542 - -
Vimu1g02866 930 Gene3D - 209 368 - -
Vimu1g02866 930 Gene3D - 37 197 - -
Vimu1g02866 930 SMART glyco_10 624 874 IPR001000 GO:0004553|GO:0005975
Vimu1g02866 930 Pfam Carbohydrate binding domain 387 530 IPR003305 GO:0016798
Vimu1g02866 930 Pfam Carbohydrate binding domain 216 352 IPR003305 GO:0016798
Vimu1g02866 930 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Vimu1g02866 930 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Vimu1g02866 930 Pfam Glycosyl hydrolase family 10 587 844 IPR001000 GO:0004553|GO:0005975
Vimu1g02866 930 Gene3D Glycosidases 577 886 - -
Vimu1g02866 930 SUPERFAMILY Galactose-binding domain-like 42 197 IPR008979 -
Vimu1g02866 930 FunFam Endo-1,4-beta-xylanase A 579 881 - -
Vimu1g02866 930 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 578 873 IPR001000 GO:0004553|GO:0005975
Vimu1g02866 930 FunFam Glycosyl hydrolase family 10 protein 211 367 - -
Vimu1g02866 930 SUPERFAMILY Galactose-binding domain-like 385 545 IPR008979 -
Vimu1g02866 930 SUPERFAMILY (Trans)glycosidases 578 881 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02866 Vimu-Chr1 40917355 40929448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02866 1 930 Glycoside Hydrolase AT1G58370 66.279 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02866 - - gmx:100816678 1738.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02866 1 40917355 40929448 Vimu1g02866 1 40917355 40929448 ECH
Vimu1g02866 1 40917355 40929448 Vimu10g03183 10 42348096 42352073 PCT