Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02852 ATGGCCACCACAACTTCTCTTTCCACACTCTTTCTTCTCTTCCTCGCAACCGTCGCTCTTGTTGCTGCTCGCCGTGACCACGTCGGAGACTTCCTCCGGCTGCCGTCCGATTCCGGTAACGATGACAACGTCCAGGGGACGCGCTGGGCCATCCTCTTCGCCGGTTCGAACGGCTATTGGAACTACAGACACCAGGCCGATATTTGTCATGCCTATCAAATACTGAGGAAAGGTGGCCTGAAAGAAGAAAATATCATTGTTTTTATGTATGATGACATTGCATTCAATTGGGACAATCCAAGGCCTGGAGTCATCATTAACAAACCAGACGGGGATGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGCGAAGATGCTACTGCTCATAACTTTTACTCTGCTTTACTTGGAGATAAGTCGGCGCTTACCGGTGGCAGTGGGAAGGTTGTGAGCAGTGGGCCCGATGATCGCATATTTATATTCTACTCTGATCATGGTGGTCCAGGGGTTCTCGGGACGCCTGCTGGTCCTTACATATATGCATCTGATTTGGTTGAAGTAAATAATCCCCCTCCCCCTTTCAAAAAGCTCTCACTGGGGGCTTTGGCTAAGAACACAGTATTTTATTTGGAGGCATGTGAAGCTGGAAGTATCTTCGAAGGTCTTCTTCCTGAAGATATCAATATTTATGCAACAACGGCTTCGAATGCCGAAGAAAGTAGTTGGGGAACATATTGTCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGACCTGTACAGTGTTGCTTGGATGGAAGACAGTGATAGACACAACTTGCGAACAGAATCTTTACACCAACAATATAAAGTGGTTAAGGATAGGACTCTATCTGGAGGTTGGTATGGCTCTCACGTGATGCAGTATGGTGATGTAGAGTTTAGCAAGGATGCTCTCTTCCTGTATTTGGGTACAGATCCTGCAAATGATAATTTGACTTTCGTGGATGAAAACTCCTTATGGTCATCTTCAACTGCAGTCAACCAAAGGGATGCAGATCTCGTCCATTTTTGGCATAAGTTCCGCAAAGCTCCGGAGGGTTCTCCTAAGAAAAATGAAGCTCGGAAACAAGTTCTGGAAGTAATGTCTCACAGAATGCATATAGACGACAGTGTGAAACTTGTTGGAAAGCTTTTATTTGGATTTGAAAAGGCTCCTGAAGTACTGAATGCTGTTAGACCGGCTGGATCGGCACTTGTTGATGACTGGGCCTGCCTGAAAACCATGGTAAGGACTTTTGAGACACATTGTGGATCCTTGTCTCAGTATGGGATGAAACACATGAGGTCCTTTGCAAACATCTGCAATGTAGGAATAAAGAAAGAGCAAATGGCTGAAGCCTCAGCACAAGCTTGTGTCACTGTTCCTGCCAGTTCCTGGAGTTCTCTGCAAAGAGGTTTCAGTGCATAA 1467 0.4594 MATTTSLSTLFLLFLATVALVAARRDHVGDFLRLPSDSGNDDNVQGTRWAILFAGSNGYWNYRHQADICHAYQILRKGGLKEENIIVFMYDDIAFNWDNPRPGVIINKPDGDDVYEGVPKDYTGEDATAHNFYSALLGDKSALTGGSGKVVSSGPDDRIFIFYSDHGGPGVLGTPAGPYIYASDLVEVNNPPPPFKKLSLGALAKNTVFYLEACEAGSIFEGLLPEDINIYATTASNAEESSWGTYCPGEYPSPPPEYSTCLGDLYSVAWMEDSDRHNLRTESLHQQYKVVKDRTLSGGWYGSHVMQYGDVEFSKDALFLYLGTDPANDNLTFVDENSLWSSSTAVNQRDADLVHFWHKFRKAPEGSPKKNEARKQVLEVMSHRMHIDDSVKLVGKLLFGFEKAPEVLNAVRPAGSALVDDWACLKTMVRTFETHCGSLSQYGMKHMRSFANICNVGIKKEQMAEASAQACVTVPASSWSSLQRGFSA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02852 488 PANTHER HEMOGLOBINASE FAMILY MEMBER 12 472 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 Pfam Peptidase C13 family 48 323 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 Gene3D - 46 347 - -
Vimu1g02852 488 PRINTS Hemoglobinase (C13) cysteine protease signature 49 73 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 PRINTS Hemoglobinase (C13) cysteine protease signature 74 103 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 PRINTS Hemoglobinase (C13) cysteine protease signature 121 136 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 PRINTS Hemoglobinase (C13) cysteine protease signature 149 168 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 PIRSF Legumain 2 488 IPR001096 GO:0006508|GO:0008233
Vimu1g02852 488 FunFam Vacuolar-processing enzyme beta-isozyme 46 347 - -
Vimu1g02852 488 FunFam Vacuolar-processing enzyme beta-isozyme 348 476 - -
Vimu1g02852 488 Gene3D - 348 477 IPR046427 -
Vimu1g02852 488 CDD legumain_C 350 471 - -
Vimu1g02852 488 PIRSF AE 2 488 IPR043577 GO:0004197|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02852 Vimu-Chr1 40790722 40796569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02852 K01369 - gmx:100784318 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02852 1 40790722 40796569 Vimu1g02852 1 40790722 40796569 ECH