Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03231 ATGGACCCCAGAATCTGGAGCAAACTACCTCCTGATGTTGTGGAACACATACTTCTGTTACTCCCTCTCAAGACTCTCTTGAATCTCAGACCCACTTGCAAAGCCTTCTCCTCTCTTCTCTTCTCTCCTTCCTTTGTCTCCAAACATTCCTCATCATCGTCATCTTCTTCTTCTTCTTCACCCTTCTCTTCCTTTCTCTTACTCTCACACCCTCAGTGTCCTCTCTACTTCCGTCTCTACGATTTCAACCTTTCCTCTTGGCGCACTGTCTCTCCCTCTCTCCCTTTCTCTTCATCCTTCTCTCTTGCATCCTCCTCCGGTGGCCTCTTCTGTCTCCTCAACCCCTCTTCCTCTTCCTTTCTCGTATGCAACCTCTTTGCCAAATCCTCCAGAACCATCCAATCCCCAATTCACTCTCTTCACTTCACCCACCTTTCTTTTCTCGCCACCCCTCTTACCTACTACTTAGTGCTCCTTTCTTCAAACTCCGCCTTTGTCTACAACTCCAACCACCACTCCTGGAGGCGCTTCCAGGGCTTCCATGCTGTCCTCAGTGACAGTTCCCTCCAGCAGGGTACTTTCTTCCACGGCGGCTTGTACTTCACCACCCCGGAACCGTTCTCCGTGGTGCGTTTTGATATGGAGAGTGGCAAGTGGGAGAGACACGTGGCTGAGTTGCCCCCACAACTCACCTTCGTGAGGCTTGTCAGTGATTACGAGGGAGAGGGAAAATTGTATTTGGTGGGTGGGATTGGAGCCGATGGAATCTGCAGAAGTATGAAGGTGTGGGAATTAACGAGTGACGGGGTTTGGGTGGAAGTGGTGGCGTTGCCTGAGATTATGTGCAGAAAATTTGTGTCTGGTATGATATGTGTTTGCTGTTACATGTGGCCGGAGATATTGTACTACAGTGTTTCCAGAAGGAGTTGGGATTGGCTTCCAAAATGCCCCTATTTGCCTCTCAAGTGTAGTTGTGGTTTCAAGTGGTTTTCTTTTGTTCCAAAGCTCTATGCTTCCGTCTGA 1023 0.4927 MDPRIWSKLPPDVVEHILLLLPLKTLLNLRPTCKAFSSLLFSPSFVSKHSSSSSSSSSSSPFSSFLLLSHPQCPLYFRLYDFNLSSWRTVSPSLPFSSSFSLASSSGGLFCLLNPSSSSFLVCNLFAKSSRTIQSPIHSLHFTHLSFLATPLTYYLVLLSSNSAFVYNSNHHSWRRFQGFHAVLSDSSLQQGTFFHGGLYFTTPEPFSVVRFDMESGKWERHVAELPPQLTFVRLVSDYEGEGKLYLVGGIGADGICRSMKVWELTSDGVWVEVVALPEIMCRKFVSGMICVCCYMWPEILYYSVSRRSWDWLPKCPYLPLKCSCGFKWFSFVPKLYASV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03231 340 ProSiteProfiles F-box domain profile. 3 49 IPR001810 GO:0005515
Vimu10g03231 340 Gene3D - 4 48 - -
Vimu10g03231 340 Gene3D - 158 325 IPR015915 GO:0005515
Vimu10g03231 340 FunFam F-box domain containing protein 1 48 - -
Vimu10g03231 340 PANTHER BNACNNG10540D PROTEIN 1 338 - -
Vimu10g03231 340 SUPERFAMILY F-box domain 3 74 IPR036047 GO:0005515
Vimu10g03231 340 SUPERFAMILY Kelch motif 74 324 IPR015915 GO:0005515
Vimu10g03231 340 Pfam F-box domain 6 45 IPR001810 GO:0005515
Vimu10g03231 340 SMART fbox_2 9 49 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03231 Vimu-Chr10 42733335 42734402 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03231 - - vun:114164205 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02924 1 41596807 41598132 Vimu10g03231 10 42733335 42734402 PCT