LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03196	ATGAAGGGCATGGACGAGAGTAACACCGATGATGGAAGCAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACATGGAGGTTACTTCAGCAGCCACTATTCCCAACCCCACTGTTCCGACAACCTTCTACATGTCCTCCGCTCACATTTCCAGCTCAGGAATCTGCTACGGTGTCGGGGGAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATCAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAATCGCAAGTGATGGCACCGAATTCTACGCCTAAATTGGAGGACTTTCTTGGTGGTGCAACTATGGGAACTCACGAATATGGGAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTACTATAGCACCCAAAATGCTCAGGCACAACCCAACAGAGACACACTCTCAGAATCCTTCAGGCAACAAGGGCATATGAACGTCCAAACGCACCCTTATTACTCAGGACTTGGTTGCCACGGGATGTATCAAGCACAGATGGAGGATGAAGCAACGAAGGAAGCGCACGCATCAGTTTGCAGCTCCCTAATGCCTCAAATGACAGAAGATAGTTTGAAAAACTGGATGGCTTCAAGGGAATATTCAACTCATCAGCAGGTTTTGGAGCAGGAAATGAACTGTGGAATGGGGAATGAAGGAAGTGGTACGTCTCTTGGAACTGTGGGGTGTGGCGAGTTACAGTCACTGAGTTTATCGATGAGTCCTGGTTCTCAGTCTAGTTGCGTCACTGCACCTTCTGGGCCTGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGTTGGGTCAAAAGCAACCAGTGCATAGGAAATCTATTGACACATTTGGGCAGAGAACCTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCCACGCATATAAATTTTTCGATTGAAAATTACCATGTTGAACTCGAAGAAATGAAGAGCATGAGCAGGCAAGAATACGTTGCGCACTTAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACTAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACACAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTGACGAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCGAGTATTAATCTTCTCGCGGGTGAGCTTGCAAGGAGAAATAAAGACAATGATCCAAGAAACGAGGGGAGGGAGTGCAGTATGAAAAACAATAACAAGGGTGTGATGACAAGTGAAAAGCAGGAGGAAATAGTTGAAGGTAGAAACAGCAATGAAAACGATCCAGAGTGGAAAATGGTTTTGTTTAATCAGGCTTCACAGCAGCAACAGTCAAATGGCAGTGAGGAAAAAATAATGAACTGCGGAAATTATAGAAACGGTGCTTTCTCTGGGGCCCTACAAGATCTGATTGGGATTGATTCGGTGGAGGAGTGTAGCAAAATTGGAACTCATTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCTCCATGGAAACAAAGATTGTGAACCCCATTAGTACTAGTGTTACATCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA	1980	0.4641	MKGMDESNTDDGSNHNWLGFSLSPHMNMEVTSAATIPNPTVPTTFYMSSAHISSSGICYGVGGNGNFHSPLTVMPIKSDGSLCILEALNRSQSQVMAPNSTPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAQAQPNRDTLSESFRQQGHMNVQTHPYYSGLGCHGMYQAQMEDEATKEAHASVCSSLMPQMTEDSLKNWMASREYSTHQQVLEQEMNCGMGNEGSGTSLGTVGCGELQSLSLSMSPGSQSSCVTAPSGPDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYHVELEEMKSMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEGRECSMKNNNKGVMTSEKQEEIVEGRNSNENDPEWKMVLFNQASQQQQSNGSEEKIMNCGNYRNGAFSGALQDLIGIDSVEECSKIGTHFSNASSLVTSLSSSREASPEKTGPSLLFPKPSMETKIVNPISTSVTSWLPSPTVQMRPPPAISLSHLPVFAAWTDT	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03196	659	FunFam	AP2-like ethylene-responsive transcription factor	403	464	-	-
	Vimu10g03196	659	SMART	rav1_2	404	468	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	SMART	rav1_2	305	374	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	SUPERFAMILY	DNA-binding domain	304	370	IPR016177	GO:0003677
	Vimu10g03196	659	PRINTS	Ethylene responsive element binding protein signature	444	464	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	PRINTS	Ethylene responsive element binding protein signature	306	317	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	MobiDBLite	consensus disorder prediction	595	614	-	-
	Vimu10g03196	659	ProSiteProfiles	AP2/ERF domain profile.	305	368	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	CDD	AP2	304	367	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	SUPERFAMILY	DNA-binding domain	403	464	IPR016177	GO:0003677
	Vimu10g03196	659	CDD	AP2	403	464	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	MobiDBLite	consensus disorder prediction	486	512	-	-
	Vimu10g03196	659	Gene3D	AP2/ERF domain	304	370	IPR036955	GO:0003700\|GO:0006355
	Vimu10g03196	659	Gene3D	AP2/ERF domain	404	464	IPR036955	GO:0003700\|GO:0006355
	Vimu10g03196	659	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	96	539	-	-
	Vimu10g03196	659	Pfam	AP2 domain	305	360	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	Pfam	AP2 domain	404	454	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	ProSiteProfiles	AP2/ERF domain profile.	404	462	IPR001471	GO:0003700\|GO:0006355
	Vimu10g03196	659	FunFam	AP2-like ethylene-responsive transcription factor ANT	304	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03196	Vimu-Chr10	42466926	42470056	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g03196	232	488	AP2-EREBP Transcription Factor Family	AT4G37750	70.608	7.22e-136	408

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Vimu10g03196		AP2	4.5e-10	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03196	K09285		-	gmx:100787223	1070.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03196	10	42466926	42470056	Vimu10g03196	10	42466926	42470056	ECH
	Vimu1g02883	1	41190564	41194657	Vimu10g03196	10	42466926	42470056	PCT