Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03194 ATGTCCAGTGCTAATACCAAGGGGGTGCAAATTACTGTGAAAAATGCTTTTTTCGAATTTTCTTCTTCAGTTACAGCTGGAGGATCTATGCCATGGCCACCACCCTGCCTACGTATAAAAGCCTCGTTCCTTCCTGAAACTTCTCTCGCTTCTCTTAATTACGGAGAGAAACTAGAGCGAGAACACCGCACCGTCGTCTCTGTGAGGTTCTTCCAAATGTTGGACACCTACGTGTTTGGATGGATCATATGTGCTGCGCTGAGCGCATTTGCGATTCGCAATTTCGTTTTCGCGGTGAAGAAATGTTGCGCTTCGTTGGAGACCGATGCCGCTATGTGCGCCGAAAACATTACCACTGCCGCCGGAGAATGCAGATCGTCAAAGCGCGACGGCGAAGTTGACGTCGTAATTGCCGGAGCTGGTGTCGCCGGCTCCGCTCTAGCTTACACTCTCGGCAAGAAACACTACGCTAATCCGTTGGTAGGTGATCGATCCGCACCTGAAGACTTTGAAAATTGTGTGGATACAATTGATGCTCAACAAGTGTTTGGTTATGCTATTTTCAAGGATGGGAAACACATAAGACTCTCTTATCCGTTGGAAAAGTTTCACTCAGATGTTGCCGGCAGAAGCTTTCACACTGGACGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCTTTCCCAAGTATTTGGTTTCTTCCTTTACTTTGCAGTTCTTGGTTTTCTTATAA 735 0.4694 MSSANTKGVQITVKNAFFEFSSSVTAGGSMPWPPPCLRIKASFLPETSLASLNYGEKLEREHRTVVSVRFFQMLDTYVFGWIICAALSAFAIRNFVFAVKKCCASLETDAAMCAENITTAAGECRSSKRDGEVDVVIAGAGVAGSALAYTLGKKHYANPLVGDRSAPEDFENCVDTIDAQQVFGYAIFKDGKHIRLSYPLEKFHSDVAGRSFHTGRFIQRMREKAASFPKYLVSSFTLQFLVFL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03194 244 Gene3D - 128 211 IPR036188 -
Vimu10g03194 244 PANTHER SQUALENE MONOOXYGENASE 171 231 IPR040125 GO:0004506|GO:0016126
Vimu10g03194 244 SUPERFAMILY FAD/NAD(P)-binding domain 133 228 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03194 Vimu-Chr10 42441961 42445430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03194 130 242 Miscellaneous Gene Families AT1G58440 53.030 1.34e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03194 K00511 - gmx:100820031 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03194 10 42441961 42445430 Vimu10g03194 10 42441961 42445430 ECH
Vimu1g02879 1 41126447 41132428 Vimu10g03194 10 42441961 42445430 PCT