Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03189 ATGGACATTGCTGCTCTTTTAACCTCTGCTGGAATTAATATTGCCGTGTGCGTGGTGCTCTTTTCACTCTATTCAATATTAAGAAAACAGCCCAGCAATGTCAATGTGTACTTTGGAAAAAGGTTAGCTTCCAGGAGTTCGAAAAGCCGGGATCTTTGTTTGGATAGATTTGTTCCCTCTCCTACTTGGGTAATGAAAGCATGGGAAACAACTCAAGAGGAAATGTTGACTACCGGTGGCTTGGATGCCGTGGTTTTTAGCAGGATGGTTGTGTTCAGGTTGCTCAATCATTTTAGAATTGAAACTTTTCAAGCTGCATGTCTTATACTACGGCAGATTAAATAA 345 0.4087 MDIAALLTSAGINIAVCVVLFSLYSILRKQPSNVNVYFGKRLASRSSKSRDLCLDRFVPSPTWVMKAWETTQEEMLTTGGLDAVVFSRMVVFRLLNHFRIETFQAACLILRQIK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03189 114 Pfam Late exocytosis, associated with Golgi transport 5 92 IPR032880 -
Vimu10g03189 114 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 5 94 IPR045122 GO:0005227
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03189 Vimu-Chr10 42406315 42407067 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03189 K21989 - gmx:100789875 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03189 10 42406315 42407067 Vimu10g03189 10 42406315 42407067 ECH
Vimu1g02876 1 41091349 41098726 Vimu10g03189 10 42406315 42407067 PCT