Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03183 ATGGGAGCCCTAGGCTGCAAGATTGCCTTACATGACTCCACGGGAGATGGGAAGATCCTTCCGAAGTCTGGCAAATTCTTTGCATCTGCAACAGAACGTACCAAAAGCTGGAACGGGATTCAGCAGGAGATCACAGGAAGAGTGCAGCGCAAGCTTGCCTATGAGGTTACTACATTAGTTCGGATATTTGGGAACAGTGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCGGATCTTCGCGAGCATAATCTGGATGATGGCACCAATGGATGGTTTCCATTTGGGAGTTGTGCTTTGAGCGTTGGGAGTGGTTCACCTCGTATAATTCCATCAATGGCAAGAGACTCTCTAGGGCCTCATGAATTCTTGAGCGGCCGCTACCTCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGGCCATCACTGAGAAATTGAAACTCTTTCTAACTTATCAAGTATCTTCTTGGGTCAGGATTGTTAATGTTGTCCTAAGCGTTGATGATCAGTGGGTCAATGGAGGACAAGTTGAGATTGCTGATGGCAGGTGGCACGAAATTGCTGGGTCTTTTAGAATTGAAAAGCAGGCATCTAAGGTTATGGTTTGTATTCAAGGACCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTTGCTGTTGATAGACAAGCAAGGTTTAAATATCTGAGGAGGCAGACAGAAAAGATCCGTAAGCGTGATGTTACTTTAAAATTCACTGGGCTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTGAGACAAATACAAAATGATTTTCCCATGGGAACGTGCATTAGTAGAAGCAATATTGACAATGAGGATTTTGTGGACTTCTTTGTGAAACATTTTAACTGGGCAGTTTTTGGTAATGAGTTGAAGTGGTTCTGGACTGAGCGACAACAAGGGAATCTAGATTACAAGGATGCTGATGGAATGCTAGACTTATGCCAGAAAAACAAGATAGACACTCGGGGCCATTGTATCTTCTGGGAAGTAGATGGCACTGTTCAGCAATGGGTCAAATCACTGAATAAAACTGATTTGATGAAAGCTGTCCAAAATCGCCTGAATGACTTATTGACTCGCTACAAGGGTAAATTCAGACACTATGATGTCAACAACGAAATGTTGCACGGTTCGTTTTATCAGGACAAACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACAACACACCAACTGGATCCATCTGCCACTCTTTTTGTGAATGACTATCATGTTGAAGATGGATGTGACACCAGATCAACCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAACAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGCACTCTTGGTATACCAATCTGGTTTACTGAGCTTGATGTGTCTTCCACCAATGAATATGTAAGAGCTGATGATCTGGAAGTTATGCTTCGGGAAGCTATGGCACACCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTGTTTATGAGCCGGGAAAATTCACACCTGGTGAATGCGGAAGGAGAACTGAACGAAGCTGGGAAAAGATTCCTTTCTCTCAAACAAGAGTGGTTATCTCACAGCCATGGTTATGCTGATGCGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTCGAAGTTGTCACCTTAGCAAAGAAAATTTCTAAGACATTCGTTGTTGAAAAGGGTGACTCCTCAGTGCTGGTATCAATCGATTTATAA 1845 0.4347 MGALGCKIALHDSTGDGKILPKSGKFFASATERTKSWNGIQQEITGRVQRKLAYEVTTLVRIFGNSVTTSDVRATLWVQAPDLREHNLDDGTNGWFPFGSCALSVGSGSPRIIPSMARDSLGPHEFLSGRYLLVTNRTQTWMGPAQAITEKLKLFLTYQVSSWVRIVNVVLSVDDQWVNGGQVEIADGRWHEIAGSFRIEKQASKVMVCIQGPSGVDLMIAGLQIFAVDRQARFKYLRRQTEKIRKRDVTLKFTGLDSIGNLGTLVRVRQIQNDFPMGTCISRSNIDNEDFVDFFVKHFNWAVFGNELKWFWTERQQGNLDYKDADGMLDLCQKNKIDTRGHCIFWEVDGTVQQWVKSLNKTDLMKAVQNRLNDLLTRYKGKFRHYDVNNEMLHGSFYQDKLGKDIRANMFKTTHQLDPSATLFVNDYHVEDGCDTRSTPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGIPIWFTELDVSSTNEYVRADDLEVMLREAMAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRFLSLKQEWLSHSHGYADAQGQFSFRGFSGTYNVEVVTLAKKISKTFVVEKGDSSVLVSIDL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03183 614 SUPERFAMILY Galactose-binding domain-like 85 229 IPR008979 -
Vimu10g03183 614 Coils Coil 540 560 - -
Vimu10g03183 614 SUPERFAMILY (Trans)glycosidases 265 565 IPR017853 -
Vimu10g03183 614 Pfam Carbohydrate binding domain 84 212 IPR003305 GO:0016798
Vimu10g03183 614 Gene3D - 2 83 - -
Vimu10g03183 614 Gene3D - 84 227 - -
Vimu10g03183 614 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 262 557 IPR001000 GO:0004553|GO:0005975
Vimu10g03183 614 PRINTS Glycosyl hydrolase family 10 signature 339 351 IPR001000 GO:0004553|GO:0005975
Vimu10g03183 614 PRINTS Glycosyl hydrolase family 10 signature 453 465 IPR001000 GO:0004553|GO:0005975
Vimu10g03183 614 PRINTS Glycosyl hydrolase family 10 signature 421 432 IPR001000 GO:0004553|GO:0005975
Vimu10g03183 614 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 485 495 IPR031158 -
Vimu10g03183 614 SUPERFAMILY Galactose-binding domain-like 19 79 IPR008979 -
Vimu10g03183 614 Gene3D Glycosidases 262 568 - -
Vimu10g03183 614 PANTHER GLYCOSYL HYDROLASE 85 606 IPR044846 GO:0004553|GO:0005975
Vimu10g03183 614 Pfam Glycosyl hydrolase family 10 271 528 IPR001000 GO:0004553|GO:0005975
Vimu10g03183 614 FunFam Endo-1,4-beta-xylanase A 263 565 - -
Vimu10g03183 614 SMART glyco_10 308 558 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03183 Vimu-Chr10 42348096 42352073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03183 6 86 Glycoside Hydrolase AT1G58370 70.370 1.56e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03183 - - vun:114163722 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03183 10 42348096 42352073 Vimu10g03183 10 42348096 42352073 ECH
Vimu1g02866 1 40917355 40929448 Vimu10g03183 10 42348096 42352073 PCT