Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00261 GCTTCTCTCCATTTTCATTATCCAATGGCTTCGTTTCCTCTTTACAAGCCAACCCACACCATTTTCTCCAATACCCAGTTCAAGGGCTTGCGCAGTGGCTTTTTCTGGCGACCCTCTTACTCCTTTGAGGCTCTTCCTGAAAACAAAGTACAACCCATTAGAGCTTTGGTTGCTAAATCCCCATTTCCCCTGTTTCAACCTCCCCAAGTTGAAGAAGAGTCACCGTCCGAGTTGGAGCCTGTGGATCCTGACTTCTACAAGATCGGGTATGTCCGAAGCATGCGAGCTTATGGTGTTCAATTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGACCAAGGCTTTCCATGGATGATTTCTCTAATGATGAAGTTGGGCAGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGGATATAATTCCCTTGGATCATCCAATATTTGATATTATTAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATCCCTTCTCCTATTTGCATTTGACTGTGAAGGCAATTTCTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCCTACTTCTAGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATTCCAATCTCGCTTCCACTATTAGAAAACAGCAACAACGAGCCTTAGAATTCTGGCACAAAAATTGGCACAGTGAAGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAGTTGGTGCGCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGTGTTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGTTCGCAGAAGAACGACATGTACATGCAAAGATATGGATTTTCATCACCTGTGTTCTCAGAGTTGCTTAAATTGCAGAACCCATGGGATGAGGTACAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGTCTTCGTGAAGAGTATTACCATAACAACGATCTGTCAACGGATGGCAATACCTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAAGTTGGTCAGACGGGGATGTTCCTCCAATTCCTAGTGTGGAAAGAGAGGCTGTGAAGGAGTTGCAAAATGAATGCCAAAAGATGCTCGCAGGATTTGCTACAACCTCTAAGCAAGACCAGAAATTGTTAGATTCCATGACAGATGCTACGAGGACACTAGAAGCTGCAATTAAGTATAGATTGCACAGAAAATTGTTGATGGAGAAAGTTATCAAAACATTAGACATGTACCAAGAGAAAATACTGTTCTAA 1536 0.4219 ASLHFHYPMASFPLYKPTHTIFSNTQFKGLRSGFFWRPSYSFEALPENKVQPIRALVAKSPFPLFQPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRPRLSMDDFSNDEVGQVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLASLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDSNLASTIRKQQQRALEFWHKNWHSEAPLKIKRLARDPQRFIWAVSIAQSRCINMQMRVGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDMYMQRYGFSSPVFSELLKLQNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNDLSTDGNTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQNECQKMLAGFATTSKQDQKLLDSMTDATRTLEAAIKYRLHRKLLMEKVIKTLDMYQEKILF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00261 511 Gene3D set domain protein methyltransferase, domain 1 91 358 - -
Vimu10g00261 511 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 76 481 - -
Vimu10g00261 511 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 91 358 - -
Vimu10g00261 511 SUPERFAMILY SET domain 134 359 IPR046341 -
Vimu10g00261 511 Gene3D - 388 509 IPR036464 -
Vimu10g00261 511 Pfam Rubisco LSMT substrate-binding 441 492 IPR015353 -
Vimu10g00261 511 CDD SET_LSMT 98 358 - -
Vimu10g00261 511 Pfam SET domain 134 343 IPR001214 GO:0005515
Vimu10g00261 511 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 384 504 IPR036464 -
Vimu10g00261 511 FunFam Plastid transcriptionally active 14 388 508 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu10g00261 SET 1.6e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00261 10 1611858 1619492 Vimu10g00261 10 1611858 1619492 ECH