Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04823 ATGGACAAGATCAAGGTCAAGTACCAGCTCAAAAACGAAGACTGGAAACCCTCACCAATCACAGCTCTAGCCACAAGCATCGACGGCTCACGCGTCGCCGCTTCACGCGAGGACGGTTCCTTGGAGCTTTGGCTCGTTTCTCCTAATACTATAGGCTGGCACTGTCAATTGACTATTCATGGTGATCCTAATAGGATTGTATCGTCGCTACTTTGGTGTCCTGGTGGGAAAAAAGAGTTTCCGCATGGTCGTTTGTTTTCTTCTAATATTGATGGGTCTGTTTCCTTTTGGGATCTTTATCACTTGAAGCAAACGATGGTGCTTGAATCTAACGGTGTGTCAATCTGGCAAATGGCTGTGGCTCTGTCTAAAAGTGACGATGGCAAAACCAATGGTGTTCACATGGAAAATGGTTTTTCGAAGAGATTTCTTAATGGTTTTGATGAACATGTGGACAATGAAAGTGATGAAGATTACGAATCCGATTCACCTGAAGTTCTAAAGCAATCCAGTTTAGAGGGTCCAAGAGTAGCAGTTGGCTTTGATGATGGATGTGTTAGAATTTACACTATATCTGATTCAAATGAATTTATATACTTGAAATCCTTGACCCGGGTCACAGGACGAGTTTTAAGTGTGGCTTGGAGCGACGATGCTAAGTTCATATTTTCAGGAAGTAGTGATGGGATAATTCGTATCTGGAATGCCAAATTGGGTCTTGAAGCCCATAGGATTCCAGCTAGACTGGGTGGTGACAGTGGACATGAACTTTGCATATGGTCACTACTGTATTTAAGGTCTGGGACACTTGTTAGTGGCGACAGCAGTGGGAGCGTCCAGTTTTGGGACTGCCAACTAGGAGCTCCGTCTCAAGAACCTATTACTCGTCACAAGGGAGATGTACATGCTCTGGCAGCAGCCCCTAATCACAATATGGTGTTCTCTGCCGGTTCTGATGGAAAGGTTGTTCTTTATAAACTGTCTTCATCAACCACGGAGAAAGAGAATTGGGTCTACGTTGATTATAAGAAAGGTCATTCACATGATGTCCGAGCCTTGACTGTTGCTGTGCCAATTAGCCAAGAAGATGCTTTGCCTGATGAAAGGATCAAAAGAGCTCGTCTTGAACTAAAGTCAGATGATGAAAGGATCAAAAGAGCTCGTCATGAACTAAAGCCAGATGATTCTAGTTACCACAAATGGGCTCATTCAGGGCATCCCATGCTTATCTCAGCTGGAGATGACACAAAACTCTATGCATATGCTGTTAAAGAATTCACCGGGTTTAAACCTCATTGTATCTGTCCTTTGCCTCAGAGAACACCCATTCAAGTAGCACTTAATACTTCCTTCAATCAATCACCAATGCTTTTACTACAGTCTTCACATTGGTTAGAAGTCCGTTTGCTACATCTCAAAAATGTTCGCAGAACTGGAGACTATGCAAAGGCTGAAAGTGTTGGGCGATTCAAGATTAAGGCATCTCTGGAGAGATCTGAAGCAGGAAAAATTACATGGAGTTTTGGTAAAAGGAAGCTTCCCGAGAGATTACCTACTGCCCATTCAATGATTTTTTCTCATGACTCTTCTTGGTTGATAGTAGCTGGCCTTGATAGAAGGATATATGTTGTGGATGCCAATAGCTCGGAACTGATACATACTTTTACACCATTTCGTGAATCACAAGATAATGGATTATCACCAGCCGAACCACCCATCACAAAATTGTGTACTAGTTCTGATAGACAGTGGTTGGCCGCCGTGAATTGCTTTGGGGATATATATGTATTTAACTTGGAGACACTAAGGCAGCACTGGTTCATTTCGAGATTGGGTGGTGCCTCTGTTACAGCGGCTGGATTTCCACCTCAGAACAACAATGTACTGATAGTTACAACTTCTTCAAATCAAGTGTATGCATTTGATGTAGAGGCCAGACAATTGGGGGAATGGTCAGTGCGGAATACATTTGTTCTTCCCAAGAGATTTCACGAGTTTCCGGGTGAAGTCATTGGACTTTCATTCCCTCCCTCTTCAACTTCATCTTCAGTAATGGTCTATAGCTCCAGGGCGATGTGCTTGATCGACTTCGGCTTGCCCGTGAATCAAGATGAAGGTGAAACGTTACATACTCGAGATTCAGTGGTCAAGAATTCGCCAAATTTAAATGAAAAACCATGGTCTGATGTAGTCAATAACTTAGAAGTTCAACCTGTCCACAGACATATTTATGGGACATAG 2241 0.4297 MDKIKVKYQLKNEDWKPSPITALATSIDGSRVAASREDGSLELWLVSPNTIGWHCQLTIHGDPNRIVSSLLWCPGGKKEFPHGRLFSSNIDGSVSFWDLYHLKQTMVLESNGVSIWQMAVALSKSDDGKTNGVHMENGFSKRFLNGFDEHVDNESDEDYESDSPEVLKQSSLEGPRVAVGFDDGCVRIYTISDSNEFIYLKSLTRVTGRVLSVAWSDDAKFIFSGSSDGIIRIWNAKLGLEAHRIPARLGGDSGHELCIWSLLYLRSGTLVSGDSSGSVQFWDCQLGAPSQEPITRHKGDVHALAAAPNHNMVFSAGSDGKVVLYKLSSSTTEKENWVYVDYKKGHSHDVRALTVAVPISQEDALPDERIKRARLELKSDDERIKRARHELKPDDSSYHKWAHSGHPMLISAGDDTKLYAYAVKEFTGFKPHCICPLPQRTPIQVALNTSFNQSPMLLLQSSHWLEVRLLHLKNVRRTGDYAKAESVGRFKIKASLERSEAGKITWSFGKRKLPERLPTAHSMIFSHDSSWLIVAGLDRRIYVVDANSSELIHTFTPFRESQDNGLSPAEPPITKLCTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRLGGASVTAAGFPPQNNNVLIVTTSSNQVYAFDVEARQLGEWSVRNTFVLPKRFHEFPGEVIGLSFPPSSTSSSVMVYSSRAMCLIDFGLPVNQDEGETLHTRDSVVKNSPNLNEKPWSDVVNNLEVQPVHRHIYGT 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04823 746 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 8 494 IPR044622 GO:0010073|GO:0035266
Vifa3g04823 746 Gene3D - 7 143 IPR015943 GO:0005515
Vifa3g04823 746 Gene3D - 499 717 IPR015943 GO:0005515
Vifa3g04823 746 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Vifa3g04823 746 Pfam WD domain, G-beta repeat 210 235 IPR001680 GO:0005515
Vifa3g04823 746 Coils Coil 370 390 - -
Vifa3g04823 746 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 19 237 IPR011041 -
Vifa3g04823 746 SMART WD40_4 510 545 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 290 326 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 196 235 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 3 45 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 101 190 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 52 98 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 242 283 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 604 642 IPR001680 GO:0005515
Vifa3g04823 746 SMART WD40_4 548 598 IPR001680 GO:0005515
Vifa3g04823 746 SUPERFAMILY WD40 repeat-like 173 648 IPR036322 GO:0005515
Vifa3g04823 746 Gene3D - 250 493 IPR015943 GO:0005515
Vifa3g04823 746 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 235 - -
Vifa3g04823 746 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 235 IPR001680 GO:0005515
Vifa3g04823 746 Gene3D - 161 249 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04823 Vifa-Chr3 1395642370 1395648326 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04823 K14548 - gmx:100797494 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04823 3 1395642370 1395648326 Vifa3g04823 3 1395642370 1395648326 ECH