Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04813 ATGTCTTTCTATGAAGAGAAATTTCCGGTCCCGGTCCGGTTCACGTGTCAACCGGTTTCCGAAACCATGTTCACACAAGGCGAAATAGAGGAACTATTTTCCCTAATTAACCAACCGGTTGACCCATCAAGTCCAGGCTCCGGTTCACAGGGATCAAACCGGGCGGTTTACTCAACACGCGAGAGAAAAATAAGAAGAATGCAATCGAACCGGGAGTCTGCTCGGCGGTCCCGTTGGAGAAAGAAGCGTCACGTAGAGAATCTCAATAATGACGTGAACCGGTTGAGAATCGAAAACCGGGAACTAAAAAACCGGCTCGGTTTAACCATGCAATACAATCTCATTCTATCTGCGGAGAATGAACGGCTAAGATCAGAATCAGTGACACTTTTAGCAACACTTTTGGATCTATATCGAACCTTAGAGACAATAATTTTACAATAG 444 0.4505 MSFYEEKFPVPVRFTCQPVSETMFTQGEIEELFSLINQPVDPSSPGSGSQGSNRAVYSTRERKIRRMQSNRESARRSRWRKKRHVENLNNDVNRLRIENRELKNRLGLTMQYNLILSAENERLRSESVTLLATLLDLYRTLETIILQ 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04813 147 Coils Coil 85 105 - -
Vifa3g04813 147 SMART brlzneu 58 122 IPR004827 GO:0003700|GO:0006355
Vifa3g04813 147 SUPERFAMILY Leucine zipper domain 62 116 IPR046347 GO:0003700|GO:0006355
Vifa3g04813 147 Pfam bZIP transcription factor 62 107 IPR004827 GO:0003700|GO:0006355
Vifa3g04813 147 Gene3D - 60 113 - -
Vifa3g04813 147 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 65 80 IPR004827 GO:0003700|GO:0006355
Vifa3g04813 147 MobiDBLite consensus disorder prediction 58 74 - -
Vifa3g04813 147 FunFam BZIP transcription factor 60 111 - -
Vifa3g04813 147 CDD bZIP_plant_GBF1 63 111 IPR045314 GO:0003700|GO:0006355
Vifa3g04813 147 PANTHER BZIP TRANSCRIPTION FACTOR 44 46 143 - -
Vifa3g04813 147 MobiDBLite consensus disorder prediction 37 57 - -
Vifa3g04813 147 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 60 106 IPR004827 GO:0003700|GO:0006355
Vifa3g04813 147 MobiDBLite consensus disorder prediction 37 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04813 Vifa-Chr3 1390905053 1390905496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04813 18 141 bZIP Transcription Factor Family AT3G49760 37.405 6.78e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g04813 bZIP_1 8.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04813 - - gmx:102668006 173.326