Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04812 ATGGAGAAGATCTGCGTAGCCGTTCGAGTCCGTCCTCTGGTTTCCGAAGACTCCGTCAATGGAAGCTTCTGGAAAGTCGAAGATAACCGTATCTCTCTTCACAGGATTCACGGAACTCCATTCTCCGGCTCTTGCTATGCTTTCGATCATATATTCGATGAATCTAGCACGAATTCAAGTGTCTATGAGCTTCTCACTAAGGATATCATTCTCGCCGCACTCAATGGCTTCAACGGGACTGCATTTGCTTATGGACAGACAAGTAGTGGGAAGACTTTCACCATGAATGGTTGTGAAACTGATCCGGGAGTGATTCCTCGGGCAGTTAAAGACATATTTGCAATGATAGAGACAGTAATGTCTAAAAGGGAGTTTTTGATTCGTGTTTCCTACATGGAGATTTATAATGAAGAGATTAATGACCTTCTTGTTGTTGAAAATCAGAAATTGCAAATTCATGAGAGTCTGGAGCGGGGAGTATTTGTTGCTGGACTCAGAGAGGAAATTGTGAATAATGCTGAACAAGTGCTAAATCTCATTAAAGCAGGGGAAGAGAATAGACACTTTGGTGAGACAAATATGAATGTTAGAAGTAGCCGATCGCATACCATATTTAGAATGGTGATTGAAAGTAAAGGGAAGGATTCCAATTCTTCTGATGATTCTTCAAATGACATTGTTCGAGTTTCAGTCTTGAATTTAGTAGATCTTGCTGGATCTGAAAGGATCGCAAAGACCGGAGCTGATGGAGTACGTTTGAAAGAGGGAAAATATATTAACAAGAGCTTGATGATTTTAGGAAATGTGATTAATAAATTAAGTGAAGGCTCAAAACAAAAGGGGCATATCCCATATCGTGATAGTAAGTTAACACGAATACTCCAACCTGCTCTTGGTGGAAATGCCAAAACTTCCATTATTTGTACCGTAGCACCAGAAGAGGTTCACATTGAAGAAACAAAAGGAACTCTTCAGTTTGCTAGTAGAGCCAGCCGCATCACCAATTGTGTTCAAGTGAATGAGATTCTGACAGATGCAGCATTGTTAAAGAGGCAACAGTTAGAGATTGAAGAGCTTCAGAAGAAACTTGAGGGATCCCATGCCGGGGTGCTCGAGCAAGAGATTCTTAAACTCAGGAACGATTTGCTCAAGTATGAAATGGAGCGTGGGAAGCTTGAAATGGAACTGGAAGAGGAGAGAAAATCACGTAATCAATGGATGGAAGAGCAACGGATGAAAATTGAAAATTCCAATACTACATCGTTCTCAATCTCAAACTGTGGGACGAATGACAACCAGGTGCCTAGATATTTGAGGAGACAAGGATTTATGGAAGAGTACAGTGACATTAACAGTGCGTCTCAAGGAGATATATTTAAATCCCCCTGTTTAAAGGCAGCCAGTGCTTTTGTTGTTAAGCGATCAAAGAATTCAATATTGCTAGATAGTAGTCCGCCAGATAGTAGTCCTCTCCCAGATGCTTTCAGCAATGTGGCCGATGAAGATATGTGGTTGAAAATGAACAATGGTTATGTTGCGGACCTTGATTCTCTTCAATTGACTCCCCCTCGAAATTATCAATCATTCCCACCAAGTAATACAACTCCTCGTTGTATAAATCAAATTGAAAAGTACGAACAGGAGGTTCAAGCTTTGAGAAGACAACTAGAGCTTGCTCATGAAAAGATAAATGAACTCGAGAGAAAGCTTTCAGACGAAGTACCATCAAGCAAGCAATTAATAGGGGAGAGCCTAGAAAATCAACAAGAAACACAACTTATTCAAGAATTGCCTATGAGGTTATTGGAATCTGTGGAAAACTACAGAGCTAACTTTGAGGAGGTTTTATCAGTAATGCAGAGATTTGCATTGGATGGAAAATTCTCAACTGAAAAGATGCTTTCGACCATGAGTGAAATTGGCGCACAGCTATTTTCAACTTTAGAAGGTCACTTTACAATGTATAGAAATGGTGAAAGGTCTTCCACCGGAAACAACGCTATAATCCAAGAACAACGAAAAGAGTTTCATGAGAGGATGAATAACATAATTACATCACTGGAGTTACCAGAAAGCTCAACAACAGAAAAGGAAGAGAGAACTCCTTTGTGCAACTGCGAACACAAGGGCTCCGGTTTGAGAGGAGAAACAGAAACTGCTTACTCAAAGGATGCTTTAAATGAAAGCCGGGAAAGGGAGTTACTACTTTTGAAGAACGAAAGAGATTCCTTGCTACAGAAGTTATCTGAATCGTCTGATAAATTTGCAATGGTTTCAAACCAAAAGGAAAATGCTTTGAAAGATTTAAATACTGAAGTACAGAGAAGGAAAAATCTAGAAGGGGAGTCTTTTGGGTGTCACGACTAG 2367 0.4009 MEKICVAVRVRPLVSEDSVNGSFWKVEDNRISLHRIHGTPFSGSCYAFDHIFDESSTNSSVYELLTKDIILAALNGFNGTAFAYGQTSSGKTFTMNGCETDPGVIPRAVKDIFAMIETVMSKREFLIRVSYMEIYNEEINDLLVVENQKLQIHESLERGVFVAGLREEIVNNAEQVLNLIKAGEENRHFGETNMNVRSSRSHTIFRMVIESKGKDSNSSDDSSNDIVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMILGNVINKLSEGSKQKGHIPYRDSKLTRILQPALGGNAKTSIICTVAPEEVHIEETKGTLQFASRASRITNCVQVNEILTDAALLKRQQLEIEELQKKLEGSHAGVLEQEILKLRNDLLKYEMERGKLEMELEEERKSRNQWMEEQRMKIENSNTTSFSISNCGTNDNQVPRYLRRQGFMEEYSDINSASQGDIFKSPCLKAASAFVVKRSKNSILLDSSPPDSSPLPDAFSNVADEDMWLKMNNGYVADLDSLQLTPPRNYQSFPPSNTTPRCINQIEKYEQEVQALRRQLELAHEKINELERKLSDEVPSSKQLIGESLENQQETQLIQELPMRLLESVENYRANFEEVLSVMQRFALDGKFSTEKMLSTMSEIGAQLFSTLEGHFTMYRNGERSSTGNNAIIQEQRKEFHERMNNIITSLELPESSTTEKEERTPLCNCEHKGSGLRGETETAYSKDALNESRERELLLLKNERDSLLQKLSESSDKFAMVSNQKENALKDLNTEVQRRKNLEGESFGCHD 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04812 788 CDD KISc_CENP_E 3 333 - -
Vifa3g04812 788 Gene3D Kinesin motor domain 1 365 IPR036961 -
Vifa3g04812 788 ProSitePatterns Kinesin motor domain signature. 230 241 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa3g04812 788 ProSiteProfiles Kinesin motor domain profile. 3 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 FunFam Centromere-associated protein E 1 364 - -
Vifa3g04812 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 364 IPR027417 -
Vifa3g04812 788 PANTHER CENTROMERE PROTEIN E 2 773 IPR027640 GO:0003777|GO:0007018
Vifa3g04812 788 Coils Coil 535 573 - -
Vifa3g04812 788 SMART kinesin_4 1 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 Coils Coil 727 747 - -
Vifa3g04812 788 Pfam Kinesin motor domain 9 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 PRINTS Kinesin heavy chain signature 76 97 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 PRINTS Kinesin heavy chain signature 192 209 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 PRINTS Kinesin heavy chain signature 231 249 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04812 788 Coils Coil 349 409 - -
Vifa3g04812 788 Coils Coil 759 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04812 Vifa-Chr3 1389746446 1389751764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04812 2 395 Miscellaneous Gene Families AT2G21380 45.250 1.33e-94 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04812 K11498 - gmx:100804944 1087.4