Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04809 ATGCCTGTTATTCAGGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGCCTCCAAGACAAATTCAGCCCGGTCATCCCGTTTCTTCACCACAGGGAGCACCTTCTCAATCTTCATATACTTTCACACCATCTTATGGCCAGCAGCAAGACAATGCTAATGCATTGCCCCAATACCAGCATCCACCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGCCGTCCTCAGTACCTCAGAGTGCTGCAGCGGTTACATCAGTACAGCAGGCTGGAGTTCAATCATCTGGTACTGCTTCAAGTGATACTGCAGCTAATACCACTAACTCGAACTCTGCATCTGATTGGGCAGAGCATGCTGCTGGTGATGGGAGAAGATACTACTACAACAAGACTACAAGGCAATCTAGTTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCTGACGCATCAACTGTCTGGAAAGAGTTCACTGCTTCAGATGGAAGAAAGTATTACTTCAATAAGATTACTCAGCAATCAACATGGACAATACCAGAAGAACTCAAGCTGGCTCGTGAGCAGGCGCATAAAACTATTAGCCAGGGAATGGTGTCAAATGCAAATAATACATCCAATGCTGCTGCCTCCTTAGCTGCAACACCAACACCCGCTAATGCAGCTAATTCCAACACTTTGACATCTAACGGAGTTGAACCAAGCACTGTTGTAACTGTGAGCACTGCACCCACAACTGTCACAGGAAGCTCGGGAATAGCAGCCAACTCACTTGATTCAAAAATTCCATCCATTGTTGAAAATCAAGCAACTCATGATTCTACTTCTGTCAATGGAGCTCCTCTTCAAGATGTGGAGGAAGCCAAAAGAGGATTTCCTGTAGTTGGACAAACTAATGTGACTCCTTCAGAGGAGAAAACCAATGATGGTGAAACTTTTGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGCGAATGTTCATTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAGTGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCATTCAATGAGTATTTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGGCGCATAAAGCAGAAAAAAGCCCGTGAAGAATTCACAAAGATGTTAGAAGAGTGCAAGGAGCTAAAATCGTCCACTAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCCGTTGAAAGACCCAGAGACCGGGAAGATTTATTTGAAAGTTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAGTTTCTGGAGTCCTGTGATTTTGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGACACTTACTACTTGAAAAAATTGACCGCTTGCTTGTTTACCAGGATTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAGAAAAGGATACAGAAGGAACGAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTGGAAGAACATATTGCTGATGGAGTTCTTACAGCTAAAACACAATGGCGAGATTATTGCTTGAAGGTGAAAGAGTTACCTCAATATCAAGCTGTTGCATCAAATACATCTGGTTCTACTCCGAGAGATTTATATGAGGATGTCTTTGAAGATCTTGAAAAGAAGTATCACGAAGACAAGACACTCATAAAAGATACACTTAAGTCAGGCAAGATCACAGTAGTGACCACATCAGTATATGAGGACTTCAAGTCTTCTGTATTAGAAGAAGCTGCTTGCCAAACGATATCAGTGATCAATTTGAAGCTTTTATATGAAGAATTATTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGGCAACGCCTTGCTGATGACTTTACTAACTTGTTATATTCGTTCAAGGATATTACTACTAATTCAATATGGGAGGATTGCAAGCCACTTTTTGAGGAGGCACAAGAGTACAGGTCAATTGGGGATGAAAGCTACAGTAGAGAAATTTTTGAGGAATACATTACATACTTAAAGGAAAAAGTTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCCAAGAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGTAAAGAGAAGGAGAAAAAAGAGAAGGAAAGAGAACGTGAAAAAGAGAAGTCTAAGGAACTACATAAGAAAGATGACACAGATAGCGATAATCCTGACATAACGGACAGCCATGGTTATAGAGAGGAGAAGAAAAAAGAAAAGGATAAGGATAAGGAAAGAAAACATCGGAGAAGACATCAGAGTAGTTTAGAAGACGTGGATTCTGAAAAAGACGAGAAGGAAGAATCTAGAAAATCGCGAAGACATGGAAGTGAACGAAAGAAGTCTAGGAAGCATGCAAACTCTGAGTCAGACAATGAAACTCGGCATAAAAAACACAAGAGGGAGCACGGGGATGGTTCCAGGAGAACTGGATGGAATGAGGAGCTTGAAGATGGGGAGCTCGGCGATGATGTAGAGGTTTAG 2646 0.4199 MPVIQGQQLQYSQQMQQLPPRQIQPGHPVSSPQGAPSQSSYTFTPSYGQQQDNANALPQYQHPPQMLAPPAGQPWPSSVPQSAAAVTSVQQAGVQSSGTASSDTAANTTNSNSASDWAEHAAGDGRRYYYNKTTRQSSWEKPLELMSPLERADASTVWKEFTASDGRKYYFNKITQQSTWTIPEELKLAREQAHKTISQGMVSNANNTSNAAASLAATPTPANAANSNTLTSNGVEPSTVVTVSTAPTTVTGSSGIAANSLDSKIPSIVENQATHDSTSVNGAPLQDVEEAKRGFPVVGQTNVTPSEEKTNDGETFVYANKLEAKNAFKALLESANVHSDWTWEQAMREIISDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIKQKKAREEFTKMLEECKELKSSTRWSKAISMLENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRHLLLEKIDRLLVYQDYIRDLEKEEEEQKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCLKVKELPQYQAVASNTSGSTPRDLYEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVYEDFKSSVLEEAACQTISVINLKLLYEELLERAKEKEEKEAKKRQRLADDFTNLLYSFKDITTNSIWEDCKPLFEEAQEYRSIGDESYSREIFEEYITYLKEKVKEKERKREEEKAKKEKEREEKEKRKEKEKKEKEREREKEKSKELHKKDDTDSDNPDITDSHGYREEKKKEKDKDKERKHRRRHQSSLEDVDSEKDEKEESRKSRRHGSERKKSRKHANSESDNETRHKKHKREHGDGSRRTGWNEELEDGELGDDVEV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04809 881 Coils Coil 638 669 - -
Vifa3g04809 881 ProSiteProfiles FF domain profile. 321 375 IPR002713 -
Vifa3g04809 881 Coils Coil 716 770 - -
Vifa3g04809 881 Gene3D FF domain 520 601 IPR036517 -
Vifa3g04809 881 Gene3D FF domain 451 519 IPR036517 -
Vifa3g04809 881 Gene3D FF domain 377 450 IPR036517 -
Vifa3g04809 881 Coils Coil 504 532 - -
Vifa3g04809 881 Gene3D FF domain 657 731 IPR036517 -
Vifa3g04809 881 MobiDBLite consensus disorder prediction 727 796 - -
Vifa3g04809 881 Pfam FF domain 459 507 IPR002713 -
Vifa3g04809 881 Pfam FF domain 323 372 IPR002713 -
Vifa3g04809 881 Pfam FF domain 668 715 IPR002713 -
Vifa3g04809 881 Pfam FF domain 390 440 IPR002713 -
Vifa3g04809 881 Pfam FF domain 532 587 IPR002713 -
Vifa3g04809 881 ProSiteProfiles WW/rsp5/WWP domain profile. 111 144 IPR001202 GO:0005515
Vifa3g04809 881 MobiDBLite consensus disorder prediction 77 117 - -
Vifa3g04809 881 SUPERFAMILY FF domain 448 517 IPR036517 -
Vifa3g04809 881 Coils Coil 437 466 - -
Vifa3g04809 881 ProSiteProfiles FF domain profile. 456 510 IPR002713 -
Vifa3g04809 881 SUPERFAMILY FF domain 523 598 IPR036517 -
Vifa3g04809 881 Gene3D - 154 197 - -
Vifa3g04809 881 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 112 668 IPR039726 GO:0045292
Vifa3g04809 881 FunFam Pre-mRNA-processing protein 40A 521 602 - -
Vifa3g04809 881 SMART FF_2 530 595 IPR002713 -
Vifa3g04809 881 SMART FF_2 321 375 IPR002713 -
Vifa3g04809 881 SMART FF_2 388 443 IPR002713 -
Vifa3g04809 881 SMART FF_2 663 718 IPR002713 -
Vifa3g04809 881 SMART FF_2 456 510 IPR002713 -
Vifa3g04809 881 MobiDBLite consensus disorder prediction 1 117 - -
Vifa3g04809 881 ProSitePatterns WW/rsp5/WWP domain signature. 117 142 IPR001202 GO:0005515
Vifa3g04809 881 MobiDBLite consensus disorder prediction 804 828 - -
Vifa3g04809 881 Gene3D FF domain 321 376 IPR036517 -
Vifa3g04809 881 MobiDBLite consensus disorder prediction 836 870 - -
Vifa3g04809 881 SUPERFAMILY FF domain 656 725 IPR036517 -
Vifa3g04809 881 ProSiteProfiles WW/rsp5/WWP domain profile. 152 185 IPR001202 GO:0005515
Vifa3g04809 881 FunFam pre-mRNA-processing protein 40A isoform X1 320 375 - -
Vifa3g04809 881 Pfam WW domain 115 142 IPR001202 GO:0005515
Vifa3g04809 881 Pfam WW domain 158 183 IPR001202 GO:0005515
Vifa3g04809 881 FunFam Pre-mRNA-processing protein 40A 657 730 - -
Vifa3g04809 881 ProSiteProfiles FF domain profile. 388 443 IPR002713 -
Vifa3g04809 881 CDD WW 115 144 IPR001202 GO:0005515
Vifa3g04809 881 SUPERFAMILY WW domain 145 186 IPR036020 GO:0005515
Vifa3g04809 881 Coils Coil 369 408 - -
Vifa3g04809 881 SUPERFAMILY FF domain 314 375 IPR036517 -
Vifa3g04809 881 SMART ww_5 112 144 IPR001202 GO:0005515
Vifa3g04809 881 SMART ww_5 153 185 IPR001202 GO:0005515
Vifa3g04809 881 CDD WW 158 185 IPR001202 GO:0005515
Vifa3g04809 881 SUPERFAMILY FF domain 382 450 IPR036517 -
Vifa3g04809 881 SUPERFAMILY WW domain 116 150 IPR036020 GO:0005515
Vifa3g04809 881 FunFam Pre-mRNA-processing protein 40A 377 450 - -
Vifa3g04809 881 ProSiteProfiles FF domain profile. 528 591 IPR002713 -
Vifa3g04809 881 MobiDBLite consensus disorder prediction 727 881 - -
Vifa3g04809 881 ProSitePatterns WW/rsp5/WWP domain signature. 158 183 IPR001202 GO:0005515
Vifa3g04809 881 Gene3D - 96 153 - -
Vifa3g04809 881 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04809 Vifa-Chr3 1389496575 1389506725 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04809 K12821 - gmx:100819928 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04809 3 1389496575 1389506725 Vifa3g04809 3 1389496575 1389506725 ECH