Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04798 ATGGGTGGTGAAGAAAAAGCCATGGAGTTTCAACATGGAAATGAGAACATTATGACTTCAGAAATGGATATTAGTTCTGTGTCAATGGCTAATAAGCCTTCTTCCGAGGTAGTCAATCATCATCAACATCATCCTTTCCTTGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAGGCTCATACTTTTGGGGGTTCTTCAATGGTATCTCACAATGAGTTTGCTAATACAAATTCAAATTATAACCCTCTTGTGTTGGAGAATCATCAAGGAATGAGTAGCACCTCTCACCTTGTTCAATACTCAAATCTTGGTGGCATGATCCACAAGGTTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGTGGTGATCATGTAGCTAATACATCAGGATATCCAATTCCACCACAACATTATAACCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTCATGGTGAACAATCTCAAGTTGAGGACTCAATTCATGAGGATGGAGGTCTAGGATCTGCACCTAGCAGTGGAAATAGAAGAAAGAGAGGATTTGATCAAAATTCTGATTTCAGTCCAAACAAGAGTGCTGAGGGTGATGGGGTGAAAGATTCTCCTAGGAAGATCTCTGATGGTTCAAAAGAACATGAAAAGAAACCAAAAGTCGAGCAATCAGGGAAGCAAGCTAAAGACAACTCTCCTAGTGGAGAAGCTTCAAAAGATAATTTCATTCATGTTAGAGCTAGAAGAGGTCAAGCCACCAACAGTCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATAAGTGAACGTATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCCGTAATGCTAGATGAGATAATAAACTATGTGCAGTCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACCGTGAACCCCGAACTGAACTTCGATGTAGAGCGGCTCTTATCCAAGGATATTCTCCAGTCACGCTTAGGACTCGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCGAATTCAAGTTTCCAGGGAAACATGGCTGGCCTGCCTAGTTCATCAACACAATTCCCTCCTTTGCCTCAGAATGTTTTGGACCATGACTTCCAAAGCTTTTATGGAATGGGATATGATTCCAACACAGCACTTGATAATTTGGGATCCAATGGGAGGTTGAAACCAGAGTTATAG 1263 0.4196 MGGEEKAMEFQHGNENIMTSEMDISSVSMANKPSSEVVNHHQHHPFLASSAWDNPLVSLSQAHTFGGSSMVSHNEFANTNSNYNPLVLENHQGMSSTSHLVQYSNLGGMIHKVPSYGSGSFSEMVGSFGQHGGDHVANTSGYPIPPQHYNHIKDAGIQRGQIHGEQSQVEDSIHEDGGLGSAPSSGNRRKRGFDQNSDFSPNKSAEGDGVKDSPRKISDGSKEHEKKPKVEQSGKQAKDNSPSGEASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNSSFQGNMAGLPSSSTQFPPLPQNVLDHDFQSFYGMGYDSNTALDNLGSNGRLKPEL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04798 420 MobiDBLite consensus disorder prediction 208 234 - -
Vifa3g04798 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 328 IPR036638 GO:0046983
Vifa3g04798 420 CDD bHLH_AtBPE_like 250 335 - -
Vifa3g04798 420 SMART finulus 266 316 IPR011598 GO:0046983
Vifa3g04798 420 Gene3D - 257 331 IPR036638 GO:0046983
Vifa3g04798 420 FunFam Basic helix-loop-helix transcription factor 257 329 - -
Vifa3g04798 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 171 368 IPR024097 GO:0006355
Vifa3g04798 420 MobiDBLite consensus disorder prediction 162 248 - -
Vifa3g04798 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
Vifa3g04798 420 Pfam Helix-loop-helix DNA-binding domain 263 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04798 Vifa-Chr3 1384633659 1384636514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04798 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.627 4.18e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g04798 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04798 - - gmx:100794464 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04798 3 1384633659 1384636514 Vifa3g04798 3 1384633659 1384636514 ECH