Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04794 ATGATGGATCTGTATTTGCTCGGTTGGATTTTAAGTTCCGTTTTGAGTTTGTTTGCGTTCTACAGTTTGGTTTTCTCACGGAAGAGAAACTCCGCTAAGCCGGTGAAGCCGACTGCGGAAAGCGTGACGACTGGTGCCGGAGAAATTATATCGGAGAAGCTTAACCGTGACGCTGATGTTATTGTTGTTGGAGCCGGTATCGCTGGCGCGGCTTTGGCTCACACTCTCGGGAAGGATGGACGAAGAGTGCATGTCATTGAAAGAGATCTGAGTGAACCTGACAGAATTGTTGGAGAGTTGCTCCAACCTGGAGGCTATCTCAAATTAGTTGAATTGGGGCTTGAAGATTGTGTGGACAAGATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTCTCTGGCAGAAGTTTTCACAATGGACGTTTTATTCAGAGGATGCGAGAAAAAGCTGCCTCCCTTCCCAATGTAAATTTGGAGCAAGGAACAGTCACTTCTCTACTTGAAGAGAAGGGGACAATCAAAGGTGTGCAATACAAGAATAAAGATGGTCAGCAATTGATAGCTTATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTTTCAAACTTGCGCCGTTCTCTTTGCAACCCTAAGGTAGACAACCCCTCTTGTTTTGTTGGCTTGATTTTAGAGAACTGTGAACTTCCATGTGCCAATCATGGCCACGTCATACTAGGAGATCCTTCGCCAATTCTTTTCTATCCTATAAGTAGTACAGAGGTTCGTTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCCTCTATTTCAAATGGTGATATGACAAAGTATCTAAAGACAACGGTTGCTCCTCAGGTCCCCCCTGAGCTTTATGATGCATTCATAGCCGCAGTGGACAAGGGCAACATAAGGACAATGCCTAACAGAAGTATGCCAGCAGATCCCCGTCCTACTCCTGGCGCCGTACTGATGGGAGATGCATTCAACATGCGTCATCCTTTAACAGGGGGCGGAATGACAGTAGCATTGTCAGATATTGTGGTGCTGAGAAATCTTCTCAAGCCTTTGCGTGACCTGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTCTATACCCTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGTGCCCTTTACAAGGTTTTTTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCAGAAGGACCGATCTCTTTACTTTCAGGATTAAACCCTCGTCCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTCGCAGTATTTGGTGTAGGCCGTTTACTATTACCATTTCCTTCACCTAAGCGGGTGTGGCTCGGAGCTCGATTACTCTCTGGTGCATCTGGAATCATTTTGCCCATAATTAAGGCTGAAGGAATTCGCCAAATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCGGTTTCACAAGAGTGA 1575 0.4559 MMDLYLLGWILSSVLSLFAFYSLVFSRKRNSAKPVKPTAESVTTGAGEIISEKLNRDADVIVVGAGIAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVDKIDAQKVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVNLEQGTVTSLLEEKGTIKGVQYKNKDGQQLIAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLILENCELPCANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRVWLGARLLSGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVSQE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04794 524 PANTHER SQUALENE MONOOXYGENASE 16 520 IPR040125 GO:0004506|GO:0016126
Vifa3g04794 524 Pfam NAD(P)-binding Rossmann-like domain 62 88 - -
Vifa3g04794 524 SUPERFAMILY FAD/NAD(P)-binding domain 58 432 IPR036188 -
Vifa3g04794 524 Gene3D - 46 412 IPR036188 -
Vifa3g04794 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 208 223 - -
Vifa3g04794 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 - -
Vifa3g04794 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 59 81 - -
Vifa3g04794 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 351 367 - -
Vifa3g04794 524 Pfam Squalene epoxidase 209 481 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vifa3g04794 524 FunFam Squalene monooxygenase 2 52 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04794 Vifa-Chr3 1382792669 1382796532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04794 19 524 Miscellaneous Gene Families AT1G58440 77.165 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04794 K00511 - gmx:100804406 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04794 3 1382792669 1382796532 Vifa3g04794 3 1382792669 1382796532 ECH
Vifa3g04794 3 1382792669 1382796532 Vifa2g03736 2 1093241895 1093245339 PCT