Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04793 ATGAAGGACGATGAAGGTGATGATAGGAAAATCAACGACGATAAATTTGTTCAAGATATCAAACTTTGGGGAGTTTTCCTCTTCGGATTAATCGGCGCCACCGCCACCACCTTCGCCCTGTCCAGGTCGTTGAAAGGAGGGAGTGTCGGTTCTTTTCGAACGGCTTTTCAAGAAGAAGCATGGAAGAGGTACAATAAGCGACTGCAAGAGGAGTACGAGGAAGAGATGGAGAGAGTGGAAAGAATAAGGCGTATGCAAGAAGTGTTTAATAGAGAAAGGAATAAGTATAGACGAAATCCTGAGAACTGGAAGGAAAATGGTTCTGGTACATATCATCAGAGTTTCCCAAGAGATGATTGGTATTGGAAGGCTGAACAAACCTTCAGAGACCAGTGGAAAAATTACCCAAGGGAAAATGGAAGCAATTATTCATTATTATCACACCACTACTCAGTTTTGGGTCTCGACAGGTCTAGAACGACACCATATACAGATGCTGAAATTAAGACAGCATTTAGGACCAAGGCAAAGCAGTATCATCCTGACCAGAACCAAGAGAATAGAGTGGCTGCTGAGGCTAAGTTCAAAGAAGTAATGAGTTCATATGAGGCCATACAACAAGAGAGAAAGAATCATAGTTTGTAA 645 0.4217 MKDDEGDDRKINDDKFVQDIKLWGVFLFGLIGATATTFALSRSLKGGSVGSFRTAFQEEAWKRYNKRLQEEYEEEMERVERIRRMQEVFNRERNKYRRNPENWKENGSGTYHQSFPRDDWYWKAEQTFRDQWKNYPRENGSNYSLLSHHYSVLGLDRSRTTPYTDAEIKTAFRTKAKQYHPDQNQENRVAAEAKFKEVMSSYEAIQQERKNHSL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04793 214 CDD DnaJ 149 203 IPR001623 -
Vifa3g04793 214 ProSiteProfiles dnaJ domain profile. 148 210 IPR001623 -
Vifa3g04793 214 Coils Coil 58 85 - -
Vifa3g04793 214 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 212 - -
Vifa3g04793 214 Pfam DnaJ domain 149 210 IPR001623 -
Vifa3g04793 214 PRINTS DnaJ domain signature 172 187 IPR001623 -
Vifa3g04793 214 PRINTS DnaJ domain signature 150 168 IPR001623 -
Vifa3g04793 214 PRINTS DnaJ domain signature 190 210 IPR001623 -
Vifa3g04793 214 Gene3D DnaJ domain 140 214 IPR036869 -
Vifa3g04793 214 SUPERFAMILY Chaperone J-domain 148 210 IPR036869 -
Vifa3g04793 214 SMART dnaj_3 147 210 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04793 Vifa-Chr3 1382785584 1382788993 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04793 - - gmx:100804936 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04793 3 1382785584 1382788993 Vifa3g04793 3 1382785584 1382788993 ECH
Vifa3g04793 3 1382785584 1382788993 Vifa2g03737 2 1093259595 1093263526 PCT