Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04791 ATGGACATTGTTGCTCTTTTAACGTCAGCTGGAATTAATATTGCTGTGTGTGCAGTGCTCTTTTCACTTTATTCTGTATTAAGGAAACAGCCCAGCAATGTTAATGTATACTTTGGACGGAGACTAGAATCTCATCGTTCACGACACCCTGATTTCTGGCTGGAAAGATTTGTTCCTTCTCCTGGCTGGATATTAAAAGCATGGTCAACATCCGAGAATGAGATATTGGATATTGGTGGCTTGGATGCCGTAGTTTTTGTAAGGATACTTGTGTTCAGTATTCGAGTTTTTTCCATTGCTGCTGTCATCTGCACTGTTCTAGTGCTTCCTGTGAATTACTATGGTAAAGAAACAAGTCATAAGAATATACCTTTGGAGTCACTGGAAGTTTTTACCATTGAGAATGTCAAAACAGGATCAAGATTGCTTTGGGCTCATTGTCTTGCATTATACATCATTACACTTGCAGCTTGCACTCTTCTTTACTTTGAATACAAGAGCATTACTAAGTTGAAGCTACTTCATATTATTGGATCTCCTCCAAAACCAAGTCATTTTACTATTCTTGTCCGATCAATTCCCTGGTCAGCAGAACAATCATACTGTGACACAGTGAACAAATTCTTCTCATATTACCATGCATCAACATATTTGTCTCACCAAATGATTTATAAGTGTGGCAAAGTCCAGAAACTGAAGGACGAGGCTGAACATTTCTGCAAGGTAGTTAAAGACGCTTCATCGGAAAAGACTTGTAATCCAAGTTTTGTGCCATGTTGCTGTTTGGGAACTTCCACAGATTCTTTTAAGATGAATTCTAATGAGATGGGTAGTATTGATGGGAAACCATGCTACACTGACATAGATACAAGGAAAAAGGAACTCCCATCTGCTTTTGTGTTCTTTAAAAGTCGGTATGCTGCTCTTATGGCTTCACAAACTCTGCAAACATCAAATCCTATGTTATGGGTGACAGACTTAGCTCCTGAACCACACGATGTTCACTGGTCCAATATTCGTGTACAATATAGGCAAATTTGGATCCGCAGAATGGCTACATTTGCGGCTTCGATTGCATTCATGCTTGTGTTCCTCATCCCTGTTACACTAGTACAAGGCTTGACTCAACTAGACAAGCTTCAGAAAATGTTCCCTTTTCTGGCAGGGCTACCTAAAAAGAATTATATGATTCAGCTGGTGACGGGTTACCTACCAAGTGTGATATTGGTTTTATTTTTGTGCGCAGTTCCACCTATGATGATTTTATTTTCAACAGTTGAGGGTCCTATTTCCCGCAGTAGAAGGAAGAAAAGTGCATGTTGGAAAGTTTTGTACTTCACAATCTGGAATGTGTTTTTCGTTAATGTTTTCACTGGTTCTGTTATCAGTCAACTTTCAGTCTTTTCTAGCATAAAAGACTTGCCTGGACAACTTGCGAAGGCAGTGCCATCTCAGGCTACCTTCTTCACAACTTATATTTTGTCATCTGGTTGGGCAAGTTTGGGATTTGAACTTCTGCAAATTTGTCCTCTTTTATATAATCTATTCCAGAGATTCCTACTCAGGGTTAAGGATGATACACTTGTTGGTATAACTTTTCCATATCATACAGAAGTTCCAAGGGTACTACTATTTGGATTTCTTGGGTTTACCTGTTCTATTCTGGCACCTCTAATGCTTCCCTTCTTGTTGATCTACTTTTTCCTTGCTTACCTAGTTTACCGAAACCAGATTCTGAATGTGTATATTACAAAATATGATAGTGAGGGACTATACTGGCCTATTGCTCACAACACAACGGTGTTCTCTTTGTTAGTTTCTCAACTTATTGCACTTGGAGTGTTCGGAATAAAACGCTCCACAGTTGCGTCTGGATTTACCATTCCCTTGATCATTATCACCCTTCTTTTTCATCAGTATTGTAGGCATCGATTTCTCCCAGTATTTAAAAGCTATTCAGCACAGATTCTTGTTGACATGGATAGGAAAGACGAAGATAGTGGAAAGATGGAAGAGATTTATGAACAATTGCGTTCAGCCTACATCCAACCCTCTTTAGTGTCGCAAGCACCAAGCCCATCCGAATCCACCTGCCCACAAGACGACAAGCAGTCTTCTGAGATTTCAGAAGATATCGAGAAAGGCAAAGCAGTTGATCAACAACATAGACCAGAGCCTGTCCATCGCACTTTGAGTTCTAGTTCAGATAGATCAGTACTTAGTGGAGACCAAACGAGCGATCCGGCTTGTACATTGAATAAGAATATTCCTAATGTGCCCCATACAGCGCTTGAACATTTAATTAATGATGGATTATGA 2319 0.3967 MDIVALLTSAGINIAVCAVLFSLYSVLRKQPSNVNVYFGRRLESHRSRHPDFWLERFVPSPGWILKAWSTSENEILDIGGLDAVVFVRILVFSIRVFSIAAVICTVLVLPVNYYGKETSHKNIPLESLEVFTIENVKTGSRLLWAHCLALYIITLAACTLLYFEYKSITKLKLLHIIGSPPKPSHFTILVRSIPWSAEQSYCDTVNKFFSYYHASTYLSHQMIYKCGKVQKLKDEAEHFCKVVKDASSEKTCNPSFVPCCCLGTSTDSFKMNSNEMGSIDGKPCYTDIDTRKKELPSAFVFFKSRYAALMASQTLQTSNPMLWVTDLAPEPHDVHWSNIRVQYRQIWIRRMATFAASIAFMLVFLIPVTLVQGLTQLDKLQKMFPFLAGLPKKNYMIQLVTGYLPSVILVLFLCAVPPMMILFSTVEGPISRSRRKKSACWKVLYFTIWNVFFVNVFTGSVISQLSVFSSIKDLPGQLAKAVPSQATFFTTYILSSGWASLGFELLQICPLLYNLFQRFLLRVKDDTLVGITFPYHTEVPRVLLFGFLGFTCSILAPLMLPFLLIYFFLAYLVYRNQILNVYITKYDSEGLYWPIAHNTTVFSLLVSQLIALGVFGIKRSTVASGFTIPLIIITLLFHQYCRHRFLPVFKSYSAQILVDMDRKDEDSGKMEEIYEQLRSAYIQPSLVSQAPSPSESTCPQDDKQSSEISEDIEKGKAVDQQHRPEPVHRTLSSSSDRSVLSGDQTSDPACTLNKNIPNVPHTALEHLINDGL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04791 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 349 615 IPR003864 GO:0016020
Vifa3g04791 772 MobiDBLite consensus disorder prediction 731 757 - -
Vifa3g04791 772 Pfam Late exocytosis, associated with Golgi transport 6 164 IPR032880 -
Vifa3g04791 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 185 338 IPR027815 -
Vifa3g04791 772 MobiDBLite consensus disorder prediction 704 730 - -
Vifa3g04791 772 MobiDBLite consensus disorder prediction 688 703 - -
Vifa3g04791 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 5 699 IPR045122 GO:0005227
Vifa3g04791 772 MobiDBLite consensus disorder prediction 688 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04791 Vifa-Chr3 1382584691 1382592197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04791 K21989 - gmx:100796574 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04791 3 1382584691 1382592197 Vifa3g04791 3 1382584691 1382592197 ECH
Vifa3g04791 3 1382584691 1382592197 Vifa2g03743 2 1096294777 1096299518 PCT