Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04786 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCTCCAGAAGAAGATTCTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTACCTCAAAAAATTGGTTTGAAACGCTGTGGAAAAAGTTGTCGTTTAAGGTGGTTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTTTCAGAAGAAGAAGATAATATCATTTGTAGTCTCTACGTTAGTATCGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAACTATTGGAACACAAGGTTGAAAAAGAAGCTATTAGGAAAACATCGAAAAGAACAACATCAACAACAACAACAAATACGTAATAGAGGAAACAACAGTGTTAATGTTATTAAGCAAGAAAACAACAATCAATACTTGGTTCAAGAACAAGCATATTTGCCACATCATGTAATGCAAAATTTGCTATCCACACCTCCTCCGCCTCCGCCTCCGCCTCCGCCTCAACCATCGATGTTGTCATCATACACAAACCAAGCCTTCAATGATCAAGATTCCATTAGAAAACTGCTTATCAAGCTTGGAGGTAGATTCTCAGGTGATTACCATCATCATGATCCTAATTCTAGTACAAATGACTTTGATGGTTTGAATGTTCAATTCTCAAATAATGTTACTTCTTCTACTATTGAACAAGTGTATGATCAAGAACATGTCGGATCTTCTTCTTGTGTTAATTCTTCAAATGAAAACAATCAAGTACAATTTGTACAAAATGGTCAATACTTTGACACGGTGCAAGAAGAGGAACAAGGAAAATTCATCCCTGAAATTGATCACATGGTATCTAGTAATTTTTCACAAAGATTTGATGGATTGGAATTCTTGTATGGTGATGAAGACATGAGTATTGAAAATAATAAGATAGAAGCTTCTAGTATTACTTGGGGTGAAGCTACTACTTCAACTTATCATCACCCTCTTGATTCGAAATACCAAGGTTAG 1041 0.367 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQHQQQQQIRNRGNNSVNVIKQENNNQYLVQEQAYLPHHVMQNLLSTPPPPPPPPPPQPSMLSSYTNQAFNDQDSIRKLLIKLGGRFSGDYHHHDPNSSTNDFDGLNVQFSNNVTSSTIEQVYDQEHVGSSSCVNSSNENNQVQFVQNGQYFDTVQEEEQGKFIPEIDHMVSSNFSQRFDGLEFLYGDEDMSIENNKIEASSITWGEATTSTYHHPLDSKYQG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04786 346 MobiDBLite consensus disorder prediction 167 184 - -
Vifa3g04786 346 CDD SANT 71 113 IPR001005 -
Vifa3g04786 346 MobiDBLite consensus disorder prediction 165 188 - -
Vifa3g04786 346 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa3g04786 346 Gene3D - 7 68 - -
Vifa3g04786 346 FunFam Transcription factor MYB36 70 140 - -
Vifa3g04786 346 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa3g04786 346 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa3g04786 346 CDD SANT 16 62 IPR001005 -
Vifa3g04786 346 Gene3D - 70 158 - -
Vifa3g04786 346 PANTHER OS09G0431300 PROTEIN 1 281 - -
Vifa3g04786 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa3g04786 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa3g04786 346 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa3g04786 346 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa3g04786 346 SMART sant 67 115 IPR001005 -
Vifa3g04786 346 SMART sant 13 64 IPR001005 -
Vifa3g04786 346 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04786 Vifa-Chr3 1381115706 1381117067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04786 1 286 MYB Transcription Factor Family AT3G49690 50.167 8.99e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g04786 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04786 K09422 - gmx:100800290 352.443