Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04782 ATGGAAGAGTACACTAATAATCCAAATCCAAATCCAAGGCCAAATTTCTTGTATAATCAGATTCCAATGAACAACACCTTTCATCTTCAATCAAGAGGTTCGGAAAATTGTTTTCAGTCGGAACAAGTACATCACCATCATCATCATCAACAACAAAGTGCTGTGAAAACTGAATCTAATTGTGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGATGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCAGATGTGGTGGCTCGTATGGTGGGAGAATTTGAAGCAAGGCAAGAATTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAACTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGTGGAGAAACCGATCAAGTTCCAGAAATCGATCCTCGAGCGGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGTCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCAGAATCGGAGAAAGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGCCTGATGGACCTTACCGTTTAGGGCCATAA 1017 0.3923 MEEYTNNPNPNPRPNFLYNQIPMNNTFHLQSRGSENCFQSEQVHHHHHHQQQSAVKTESNCGGGSPSSSNEADAIKAKIIAHPQYSSLLQAYMDCQKIGAPPDVVARMVGEFEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMPDGPYRLGP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04782 338 SMART KNOX1_2 73 120 IPR005540 GO:0003677|GO:0005634
Vifa3g04782 338 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Vifa3g04782 338 Pfam KNOX1 domain 74 108 IPR005540 GO:0003677|GO:0005634
Vifa3g04782 338 FunFam Homeobox protein knotted-1-like 2 245 307 - -
Vifa3g04782 338 SMART ELK_2 220 241 IPR005539 GO:0003677
Vifa3g04782 338 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Vifa3g04782 338 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Vifa3g04782 338 MobiDBLite consensus disorder prediction 54 70 - -
Vifa3g04782 338 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Vifa3g04782 338 MobiDBLite consensus disorder prediction 40 70 - -
Vifa3g04782 338 CDD homeodomain 252 304 IPR001356 GO:0003677
Vifa3g04782 338 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Vifa3g04782 338 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Vifa3g04782 338 MobiDBLite consensus disorder prediction 186 214 - -
Vifa3g04782 338 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 310 - -
Vifa3g04782 338 Pfam KNOX2 domain 132 177 IPR005541 GO:0003677|GO:0005634
Vifa3g04782 338 SMART HOX_1 242 307 IPR001356 GO:0003677
Vifa3g04782 338 Pfam ELK domain 220 241 IPR005539 GO:0003677
Vifa3g04782 338 Gene3D - 237 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04782 Vifa-Chr3 1380537699 1380548347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04782 29 338 Homeobox Transcription Factor Family AT4G08150 69.760 3.03e-150 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa3g04782 KNOX2 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04782 - - gmx:100807602 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04782 3 1380537699 1380548347 Vifa3g04782 3 1380537699 1380548347 ECH