Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04779 ATGAAGAGGTTATTCACATGTTGTGTCTCAAACTTTCACTCTAAATCGAAGCTTAAGAAATCTCAGTCTCAGATAATGGCAGGAAACATTTCAAATCTAAGTGGGAGCAATGCGACTAATATTTTGCTGAATCATGACTTCTCTGATGGGCTCAACTCTTGGCATCCCAATTCATGCAATGGCTATGTAACTTCGCCCAAAGCAGGCGATCATGCTGGAATTTCGGTAGAGTCGGGTCGTAACTATGCTGTTATCACTGACCGGAACGAATGCTGGCAAGGTCTTGAGCAAAATATCACAGACAGAATTTCGGTTGGTTCTGCTTACTCGGTTTCGGCTTTTGTTGGAGTGTCTTGCTCTGGCCTTTCTCAGGAATCTGCTGATGTAAAAGCTACACTGAAACTAGAATATCATGGTTCAGATACACAATATATGTTCATTGGAAGTACTTCTGTTCTAAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCACTGTCTACTAAGCCCGATCGGGTTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACTTGCTTATAAGATCAGTAGAGATCAATTGCTCCAGTCCAAATAACAATATCTTAAGCACAGAAGGATGTGTTTCTACTGGAGATGAAAACATCATAGTAAATCCTCAATTTGAAGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGTGTTGAATGGTTCCATGGCAGATGGTAAAATTGTTCCAAAGTCTGGGAAATTGTTTGCATGTGCAACAGAACGAACACAAGCCTGGAATGGAATTCAGCAGGAGATAACTGGACGTGTGCAGCGCAAACTGGCCTATGAGATCACTGCTTTGGTCCGGATATATGGCAACAATGTCACTAGTGCTGATGTTCGAGCTACTTTGTGGGTTCAAACACCAGATTACCAAGAACAGTATATAGGCATTGCAAATGTACAGGCAACAGATACAGATTGGGTGACATTGCAGGGAAAATTTCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGCCCTCCTTCTGGCACTGACATTCTTGTTAACAGTTTGGTTGTAAAGCATGCTGCTAAAACACCTCCTTCTATACCACCAAATGCAAAGAATGTTATTTTTGGGCTTAATGTAATTGAGAACAGCAATCTATCTGATGACACCAAAGGATGGTTTCCCCTTGGTAGCTGCACTATGAGCGTTAAAACCGGTTCTCCTCATATAGTTCCACCAATGGCAAGAGATTCTCTTGGACCTCACGAACTCCTAAGTGGTCGCTACATACATGTAACGAATAGAACACAAACTTGGAATGGTCCTGCTCAGAATGTGAATGTTGCTCTTGGTGCTGACAACCAGTGGATCAATGGAGGACAAACCGAGGTTTCGGATAAGCAGTGGCATGAAATTGGTGGATCCTTTAGAATTGAAAAGCAACCATCAAAGCTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTAGACTTAATGGTTGCGGGACTTCAAATTTTCGCAGTCGATAGACGTGCAAGGTTTAGATATTTAAAGATGCAGACAGATAAGATTCGGAAGCGTGATGTGGTCCTAAAATTCTCTGGGCTAGATGCTAGCAGCTACGTTAACACCACGGTGCAAGTTAGGCAAACACGAAATGATTTCCCGATTGGAACTTGTATTAGCCGATCAAACATAGACAATGAAGATTTTGTCAACTTCCTTGTGAAACACTTCAACTGGGCTGTGTTTGCGAATGAGTTGAAGTGGTATTGGACTGAGGCACAACAAGGGAATTTAAATTACAAAGATGCCGATGATCTTTTAAGCTTGTGTGAAAGGTATAAAATAGAAACTCGTGGACACTGCATCTTCTGGGAAGTGGAACAAACCGTTCAACCATGGATTAAGTCACTGAATAATAATGATTTGATGACGGCAGTTCAAAACCGTTTAACCAGTCTTTTAACTCGTTACAAGGGTAAGTTCAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGATTAGGCAAAGATATAAGGGCAAACATGTTCAAAACTGCAAACCAACTTGATTCGTCGGCTACTTTGTTTGTGAATGATTATCATATCGAAGACGGATGTGACACAAAATCGTGTCCAAATAAATACATTCAACACATTCTTGATTTGCAAGAACAAGGTGCGCCAGTAGGCGGAATTGGAATTCAAGGTCATATAGATAACCCGGTCGGGCCTATTGTTTGCGCTTCGCTTGATAAATTAGGTATTCTTGGATTACCGATATGGTTTACTGAACTTGACGTGTCTTCTACGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTCAGAGAAGCTTTGGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTTTGGGAGTTGTTTATGAGTAGAGATAATGCACATTTGGTTAATGCAGAAGGTGATATCAATGAAGCTGGTAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCATAGTCATGGTCATGTTGATGAGCTAGGTCAATTCAACTTTAGAGGGTTTTATGGAACATATAATGTGGAAATTGTGACACCTTCAAAGAAAATTTCTAAGACATTTGTGCTTGATAAAGGTGACAATCCAATGATGGTATCCATTGATTTATAA 2706 0.4061 MKRLFTCCVSNFHSKSKLKKSQSQIMAGNISNLSGSNATNILLNHDFSDGLNSWHPNSCNGYVTSPKAGDHAGISVESGRNYAVITDRNECWQGLEQNITDRISVGSAYSVSAFVGVSCSGLSQESADVKATLKLEYHGSDTQYMFIGSTSVLKGSWEKLEGTFSLSTKPDRVIFYLEGPAPGVDLLIRSVEINCSSPNNNILSTEGCVSTGDENIIVNPQFEDGLNNWSGRGCKIVLNGSMADGKIVPKSGKLFACATERTQAWNGIQQEITGRVQRKLAYEITALVRIYGNNVTSADVRATLWVQTPDYQEQYIGIANVQATDTDWVTLQGKFLLNGSPSKVVLYLEGPPSGTDILVNSLVVKHAAKTPPSIPPNAKNVIFGLNVIENSNLSDDTKGWFPLGSCTMSVKTGSPHIVPPMARDSLGPHELLSGRYIHVTNRTQTWNGPAQNVNVALGADNQWINGGQTEVSDKQWHEIGGSFRIEKQPSKLMVYIQGPASGVDLMVAGLQIFAVDRRARFRYLKMQTDKIRKRDVVLKFSGLDASSYVNTTVQVRQTRNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFANELKWYWTEAQQGNLNYKDADDLLSLCERYKIETRGHCIFWEVEQTVQPWIKSLNNNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSSATLFVNDYHIEDGCDTKSCPNKYIQHILDLQEQGAPVGGIGIQGHIDNPVGPIVCASLDKLGILGLPIWFTELDVSSTNEYVRGDDLEVMLREALAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDELGQFNFRGFYGTYNVEIVTPSKKISKTFVLDKGDNPMMVSIDL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04779 901 SUPERFAMILY Galactose-binding domain-like 213 367 IPR008979 -
Vifa3g04779 901 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 772 782 IPR031158 -
Vifa3g04779 901 Pfam Carbohydrate binding domain 40 182 IPR003305 GO:0016798
Vifa3g04779 901 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Vifa3g04779 901 Gene3D - 34 195 - -
Vifa3g04779 901 Gene3D - 457 514 - -
Vifa3g04779 901 Gene3D - 384 456 - -
Vifa3g04779 901 Gene3D - 209 367 - -
Vifa3g04779 901 PRINTS Glycosyl hydrolase family 10 signature 740 752 IPR001000 GO:0004553|GO:0005975
Vifa3g04779 901 PRINTS Glycosyl hydrolase family 10 signature 626 638 IPR001000 GO:0004553|GO:0005975
Vifa3g04779 901 PRINTS Glycosyl hydrolase family 10 signature 708 719 IPR001000 GO:0004553|GO:0005975
Vifa3g04779 901 FunFam Glycosyl hydrolase family 10 protein 210 366 - -
Vifa3g04779 901 SUPERFAMILY Galactose-binding domain-like 384 516 IPR008979 -
Vifa3g04779 901 Pfam Glycosyl hydrolase family 10 559 815 IPR001000 GO:0004553|GO:0005975
Vifa3g04779 901 SUPERFAMILY (Trans)glycosidases 549 852 IPR017853 -
Vifa3g04779 901 Gene3D Glycosidases 547 856 - -
Vifa3g04779 901 SUPERFAMILY Galactose-binding domain-like 39 196 IPR008979 -
Vifa3g04779 901 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 549 844 IPR001000 GO:0004553|GO:0005975
Vifa3g04779 901 PANTHER GLYCOSYL HYDROLASE 376 893 IPR044846 GO:0004553|GO:0005975
Vifa3g04779 901 FunFam Endo-1,4-beta-xylanase A 550 852 - -
Vifa3g04779 901 SMART glyco_10 595 845 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04779 Vifa-Chr3 1379259305 1379263250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04779 1 901 Glycoside Hydrolase AT1G58370 63.789 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04779 - - gmx:100816678 1508.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04779 3 1379259305 1379263250 Vifa3g04779 3 1379259305 1379263250 ECH
Vifa3g04779 3 1379259305 1379263250 Vifa2g03746 2 1097695873 1097698519 PCT