Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04778 ATGGGAAGAGCTCCTTGTTGTGACAAAGAGAAAGTGAAGAAAGGACCATGGTCTCCCGATGAAGATGCAAAACTCAAGAATTATCTTGAAATTCATGGCACTGTTGAAAATTGGATTTCACTGCCCAAAAAAGCTGATCTTAAGAGGTGTGGGAAGAGTTGTCGTCTAAGGTGGCTGAATTATCTTAGGCCAAACATCAAACATGGAGGCTTTACTGAAGAAGAGGACATCACCATTTGCTCTCTCTATTCTCAAATTGGTAGCAGATGGTCTGTCATTGCATCAAAACTACATGGCAGAACAGACAATGATGTGAAAAATTATTGGAACTCAAAACTGAAGAAAAGAATTATGGCAGGAAAATTAACCTCAAATCATTGTCTGGAAATGACAATACTACCCCTTTAA 408 0.3873 MGRAPCCDKEKVKKGPWSPDEDAKLKNYLEIHGTVENWISLPKKADLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDITICSLYSQIGSRWSVIASKLHGRTDNDVKNYWNSKLKKRIMAGKLTSNHCLEMTILPL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04778 135 Gene3D - 6 68 - -
Vifa3g04778 135 CDD SANT 71 113 IPR001005 -
Vifa3g04778 135 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa3g04778 135 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa3g04778 135 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa3g04778 135 Gene3D - 70 130 - -
Vifa3g04778 135 PANTHER OS09G0431300 PROTEIN 1 121 - -
Vifa3g04778 135 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa3g04778 135 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa3g04778 135 FunFam Transcription factor RAX3 7 68 - -
Vifa3g04778 135 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vifa3g04778 135 SMART sant 67 115 IPR001005 -
Vifa3g04778 135 SMART sant 13 64 IPR001005 -
Vifa3g04778 135 CDD SANT 16 62 IPR001005 -
Vifa3g04778 135 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04778 Vifa-Chr3 1378951771 1378953232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04778 1 126 MYB Transcription Factor Family AT4G37780 70.635 6.56e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g04778 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04778 K09422 - gmx:100817747 224.172