Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04774 ATGGCTTCTTCTCCTCCGCCGCGTCACTCTTATTCTCCAACTCCTCCGCCGCGTCACTCTTATTCTCCAATTCCTCCGCCGCGTCACTCTTATTCTCCAACTCCTCCGCCGTCGTACATCACTCACCTTCCCATTGCTCCGTCTTCTCCCTCTCGTTCCAGTGAGAAGGTTCCGGAAGAAGAGGAACCGCGAGTTCCGATTCATGTAGTGACGAAAGCTTCTCAACTTCCGGTGGATTTTCTTGAACCTTCGCCGCAGTCGAAGATCGTTATCGGTTTTGATTGTGAGGCTGTTGACTTGTGTCGCTATGGAAAACTTTGTATAATTCAGCTTGCATTTCCGGATGCTATATACCTTGTTGATGCAATTGTGGGGGGAGATGTGCTTATCCAAGCCTGTAAGCCTGCACTTGAGTCTGGTTATATCACAAAAGTGATTCATGATTGCAAACGTGACAGTGAGGCCTTGTACTTTCAATTCGGCATCAAGTTAAACAACGTGGTGGATACCCAGATTGCTTATTCACTTATAGAAGAGCAAGAGGGACAAAAGAGATTGCCAGATGACTACATTTCACTAGTTGCTCTCCTTGCAGATCCACGATATTGTGGCTTATCATATGTTGACAAGGAAGAAGTCCGGGTCCTTCTTCGACAGGACCCCAAGTTTTGGACTTACAGACCTTTATCTGAACAAATGATCCACTCTGCTGCCGATGATGTCCGTTTCCTTCTCTACATTTATCACCAAATGATGGCAAAATTAACTGAACGATCTTTGTGGCATCTTGCTGTTCGTGGTGCCTTGTACTGCCGTTGTTTCTGTGTGAACAGTAATTGTTACGCTGATTGGCCATCTCTACCTCCAATTCCAGATACGCTGAAAGTTGATGAAAATGGTCCTGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCCAAAGGAAGGATGGGATGCATTATTGGGAGAAGGGGAGCTTCGATTATGGCAATTAAGGAGTCTTGCAATGCTGAAATTCTCATCGGGGGTGTCAGGGGTCCACCCGATAAGGTCTTCATCTTAGGACCGGCGAAGCAAGTGAAGAAAGCAGAGGCTATGTTAAGGGGTAGATTATTGTATACCTGA 1122 0.459 MASSPPPRHSYSPTPPPRHSYSPIPPPRHSYSPTPPPSYITHLPIAPSSPSRSSEKVPEEEEPRVPIHVVTKASQLPVDFLEPSPQSKIVIGFDCEAVDLCRYGKLCIIQLAFPDAIYLVDAIVGGDVLIQACKPALESGYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGQKRLPDDYISLVALLADPRYCGLSYVDKEEVRVLLRQDPKFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWHLAVRGALYCRCFCVNSNCYADWPSLPPIPDTLKVDENGPEEEILSVLDVPKGRMGCIIGRRGASIMAIKESCNAEILIGGVRGPPDKVFILGPAKQVKKAEAMLRGRLLYT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04774 373 SUPERFAMILY Ribonuclease H-like 33 284 IPR012337 -
Vifa3g04774 373 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 301 369 IPR036612 GO:0003723
Vifa3g04774 373 CDD KH-I 308 367 - -
Vifa3g04774 373 Gene3D - 18 272 IPR036397 GO:0003676
Vifa3g04774 373 MobiDBLite consensus disorder prediction 1 64 - -
Vifa3g04774 373 Pfam KH domain 309 367 IPR004088 GO:0003723
Vifa3g04774 373 CDD Egl_like_exo 79 275 - -
Vifa3g04774 373 SMART 35exoneu6 67 256 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vifa3g04774 373 SMART kh_6 303 371 IPR004087 GO:0003676
Vifa3g04774 373 Gene3D K Homology domain, type 1 293 370 IPR036612 GO:0003723
Vifa3g04774 373 PANTHER EGALITARIAN, ISOFORM B 46 370 - -
Vifa3g04774 373 MobiDBLite consensus disorder prediction 1 43 - -
Vifa3g04774 373 ProSiteProfiles Type-1 KH domain profile. 304 366 - -
Vifa3g04774 373 Pfam 3'-5' exonuclease 80 255 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04774 K18740 - gmx:100788577 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04774 3 1376790819 1376796195 Vifa3g04774 3 1376790819 1376796195 ECH