Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03746 ATGGAAAACTCGGCTAAGGTCAATGCTGGAAACCTCTCAGACTCAGAGGCATGCATTTCTATTATCGAGAAGACAACAAACATGGTATGTGTTTCCACTGATGAAGAAAACATCATACTGAATCCTCAGTTTGAGGATGGCCTGAATAACTGGACTGGGAGAGGCTGCAAGATTGCATTACATGATTCCATGGGAGATGGAAAAATCCTTCCGAAATCAGGGAAATTCTTTGCAGCTGCAACCGAGCGCACACAAAGCTGGAACGGAATTCAGCAAGATATCACTGGACGAGTGCAGCGCAAACTTGCGTATGAAGTCACTGCTTTAGTTCGGATATTTGGGAACAATGTCAATACTTCTGATCTTCGTGTTACATTGTATGTTCAAAAACCAGATCTTCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCGACAAATAAAGATTGGGCTCAAATGCAAGGAAAGTTCCTTCTAAATGATTCTCCCTCAAAAGTAATTGTTTATTTTGAAGGTCCTGCTGCAGGCACTGACATTCTGCTAAATAGTTTGGTTATAAAGCATGCTGCTAAAACACCACCTTCGCCACCCCCGAATTTTGAGAATGTTGCTTTCGGCGTTAATATAATCGAGAACAGCAATCTGGATAATGGCACGAATGGCTGGTCTCCTCTTGGTAATTGTACTTTAAGCGTAGGAACTGGTTCACCGCGTGTAATTCCACCAATGGCAAGAGACTCTCTTGGTCCTCATGAATCCCTTAGTGGACGCTACATTCTTGTAACCAATCGAACACAAACATGGATGGGTCCTTCTCAGACGATTACAGAGAAATTGAAACTCTATTTAACTTATCAAGTATCTGCTTGGGTCCGGACAAGTTCCGGATCACACGGCCCTCAGAATGTTGGTATTTCGCTTAGTGTTGACGGCCAATGGGTCAATGGAGGACAAACTGAAGTGGCTGATAGCAGATGGCATGAAATCGGCGGTTCATTTAGAATTGAAAAACAGCCATCTAATGTTTTTGTTTATATTCAAGGTCCCGTTTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGACAGGCAAGGTTTCGATATTTAAGGAAGCAGACAGACAAGATTCGTAAGCGTGATGTTACATTAAAATTTTCTGGTGTGGACACATGCGAGTATACTTTCGTGAAAGTTACACAAATAGAGAACGATTTTCCAATTGGATCATGCATCACCCGAACAAATATCGACAATGAGGATTTTGTAGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTCGGTAACGAGTTGAAATGGTTTTGGACAGAGCCACAAAAAGGGAATTTCAACTACAAGGATGCTGATGACATGTTAGAATTGTGTCAGAAATACAAGATCGACATTCGTGGACATTGTATCTTCTGGGAAGTGGATGGAAATGTTCAACAATGGGTCAAATCACTTAACAAAAATGATTTAATGACAGCTGTTCAAAATCGCTTAAACGGCTTATTGAGTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGACAGACTAGGTAAGGATATAAGGGCGAACATGTTCAAGAATGCGCACCAACTCGATCCATCTGTTAACCTATTTGTGAATGACTATCACGTCGAAGATGGATGTGACACGAATTCGTCTCCAGAAAAATACATGCAACAGATTCTTGATTTGCAAGACCAAGGTGCCCCGGTTGGTGGAATTGGAATTCAGGGTCACATTGATAGTCCTATCGGGCCTATTGTTTGTTCAGCGCTCGATAAACTTGCTACCATCGGTCTACCAATCTGGTTTACCGAGCTTGACGTGTCTTCCACAAATGAATACGTTCGAGGCGATGATTTGGAAGTTATGTTACGCGAAGCAATGGCGCACCCGGCTGTAGATGGTGTAATGCTATGGGGATTTTGGGAATTGTTTATGAGCCGAGACAATGCGCATTTGGTAAATGCAGAAGGGGAAGTCAATGAAGCTGGGAGAAGATTCATTGATCTTAAACAAGAGTGGTTATCTCATAGTCATGGTCATGTTGATGAACAAGGAGAATTCAACTTCAGAGGATTCAGTGGTATGTATAATGTGGAAGTTGTTACCTTGGAAAAGGTAACTTCCAAGACATTTTTTGTTGATAAGGGTGATTCTTCATTGGTGATATCAATTGACTTGTAA 2250 0.4142 MENSAKVNAGNLSDSEACISIIEKTTNMVCVSTDEENIILNPQFEDGLNNWTGRGCKIALHDSMGDGKILPKSGKFFAAATERTQSWNGIQQDITGRVQRKLAYEVTALVRIFGNNVNTSDLRVTLYVQKPDLREQYIGIANVQATNKDWAQMQGKFLLNDSPSKVIVYFEGPAAGTDILLNSLVIKHAAKTPPSPPPNFENVAFGVNIIENSNLDNGTNGWSPLGNCTLSVGTGSPRVIPPMARDSLGPHESLSGRYILVTNRTQTWMGPSQTITEKLKLYLTYQVSAWVRTSSGSHGPQNVGISLSVDGQWVNGGQTEVADSRWHEIGGSFRIEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLRKQTDKIRKRDVTLKFSGVDTCEYTFVKVTQIENDFPIGSCITRTNIDNEDFVDFFVQHFNWAVFGNELKWFWTEPQKGNFNYKDADDMLELCQKYKIDIRGHCIFWEVDGNVQQWVKSLNKNDLMTAVQNRLNGLLSRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKNAHQLDPSVNLFVNDYHVEDGCDTNSSPEKYMQQILDLQDQGAPVGGIGIQGHIDSPIGPIVCSALDKLATIGLPIWFTELDVSSTNEYVRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNAHLVNAEGEVNEAGRRFIDLKQEWLSHSHGHVDEQGEFNFRGFSGMYNVEVVTLEKVTSKTFFVDKGDSSLVISIDL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03746 749 Pfam Carbohydrate binding domain 208 349 IPR003305 GO:0016798
Vifa2g03746 749 Pfam Carbohydrate binding domain 37 174 IPR003305 GO:0016798
Vifa2g03746 749 Pfam Glycosyl hydrolase family 10 406 663 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 Gene3D - 30 189 - -
Vifa2g03746 749 Gene3D - 204 363 - -
Vifa2g03746 749 SUPERFAMILY (Trans)glycosidases 401 700 IPR017853 -
Vifa2g03746 749 SUPERFAMILY Galactose-binding domain-like 206 366 IPR008979 -
Vifa2g03746 749 Gene3D Glycosidases 396 705 - -
Vifa2g03746 749 SUPERFAMILY Galactose-binding domain-like 36 189 IPR008979 -
Vifa2g03746 749 PANTHER GLYCOSYL HYDROLASE 193 741 IPR044846 GO:0004553|GO:0005975
Vifa2g03746 749 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 620 630 IPR031158 -
Vifa2g03746 749 Coils Coil 675 695 - -
Vifa2g03746 749 SMART glyco_10 443 693 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 FunFam Glycosyl hydrolase family 10 protein 32 188 - -
Vifa2g03746 749 PRINTS Glycosyl hydrolase family 10 signature 556 567 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 PRINTS Glycosyl hydrolase family 10 signature 588 600 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 PRINTS Glycosyl hydrolase family 10 signature 474 486 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 397 692 IPR001000 GO:0004553|GO:0005975
Vifa2g03746 749 FunFam Endo-1,4-beta-xylanase A 398 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03746 Vifa-Chr2 1097695873 1097698519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03746 31 749 Glycoside Hydrolase AT1G58370 70.263 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03746 - - gmx:100784250 1288.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03746 2 1097695873 1097698519 Vifa2g03746 2 1097695873 1097698519 ECH
Vifa3g04779 3 1379259305 1379263250 Vifa2g03746 2 1097695873 1097698519 PCT