Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03743 ATGAACATTGCTGCTCTTTTAACTTCTGCCGGAATTAATATCGTTGTGTGTTGCGTACTCTTTTCACTTTATTCCATTTTAAGAAAACAACCTAGCAATGTTAATGTATATTTCGGAAGAAAACTAGCCAATCGCAGTTTGAAAGACCTTGATCTTTCGTTCGAAAGATTTGTTCCGTCTCCTACATGGGTTATGAAAGCATGTGATACAACTCAAGAGGAGCTTCTTGATATTGGGGGTGTGGATGCCGTGGTTTTTAGTCGGATGCTCGTCTTCAGTATTCGAGTATTTTCTGTTGCTGCTATCATCTGCACAATTTTAGTGCTTCCAGTGAATTATTATGGTCATGACAGGATACGTAAAGACCTACCTTTTGAGTCACTAGAAGCTTTTACCATTGAGAATGTCCAGCAAGGATCCAGATGGCTGTGGACTCATTGTCTTGCACTATACATCATATCATTGACAACATGCTCACTTCTTTACTTTGAATACAAGAGCATTACTAATTTATGCCTAATGCATATCACTGGATTGCCTCCAAAACCAAGTCAGTTTACGATTCTTGTCCGAGGAATACCTTGGTCCCCTGAGAATTCATACTGTGAAGCTGTGAGGAAGTTTTTCACATATTACCACCCAACAACATATTTGTCACACCAAATAGTGTATAAGTGTGGTGCTGTTGAGAAGATAAAGGATGATGCAGAATATATATGTAAGATGTTGGGTGATGGCGTGGAACATAGTTGTAAGCCAAGCATTGTGCAATGTTACTTTTGTGGAGGAACCAATAGTTTTAAGATTATTGCTAATGAAACGGATAGTATACATTCGAGAACAGGCTTAACCGACGTGCATATAATTGCAAGAAAAAAGGAATGTGCAGCCGCCTTCGTGTTCTTTAAGACTCGGTATGCTGCTCTTATGGCTGCTCGGAATCTTCAAGCATCAAATCCTATGTTATGGGTCACAGAACAAGCTCCTGAACCACGTGATATTTACTGGTCCAACCTTTGCATACCTTACAAGCAACTTTGGCTTCGAAAGATATTTACATGGGTGTCTTCTTTCACCTTCGTGTTACTATTTCTCATCCCTGTTACATTTGCACAAGGCTTGACTCAATTAGACAAGCTTGAGAAAATGTTCCCTTTCTTGACAGATATACTTCAAAAGAAATTTATTGTTCAACTGGTGACTGGTTACTTTCCAAGTGTGATTTTGGTTTTATTTTTAATTGGTGTTGGACCAATGATGATGTTACTTTCAGCAGTGGAGGGGCCAATTTCTCGTAGTAGTAGGAAGAGAAGTGCATGCTACAAAGTTTTGTATTTCACTATTTGGAATGTTTTCTTTGTCAATGTTTTTGCCGGGTCTGTTATCAGTCAACTCTCGGTGTTTACAAGTATAACAGAACTACCTTCCCAACTGGCAAAGGCAGTTCCAACGCAGGCTACGTTCTTCACAACATATGTTTTATCATCAGGGTGGGCAAGTCTAGCTTTTGAGATTATACAACCGTTTGCTCTTTTTTGTAACATATTCCAAAGACTAGTACTCTGCTCTGGGCAAGATTCTTATAATGGCACCCTAACTTTTCCTTACCATACAGAAGTTCCAAGAATATTGCTATTTGGATTTCTAGGGTTCACATGTTCTATTCTTGCTCCCCTGATACTTCCGTTTTTACTGTTCTACTTTTTCCTCGCATACATCGTATACCGTAACCAGATTCTCAATGTTTATATTACAAAATACGATGGTGGCGGACAATTATGGCCTATTGCCTTCAACACAACGATCTTTTCATTAGTTGTGGCACAAGTTATTGCACTTGGGGTATTTGGAATAAAACGATCATCAATTGCATCTGGATTTACCATTCCATTGTTGATTGGTACTTTTCTATTTAACCAATATTGTAGGCAACGGTTTCTTCCAGTATTTAAGAACAATGCAGCACAGGTTTTTATCGACATGGATCACAGAGATACAAATAGTAGAAGGATGGATGAGATTTATGATCAATTGCATTCAGCATACTCCCAATTCAGTTCTAACTCCCCTCAACCTGGATGTTTTGGTTATCCAGGAGACAGAGAGCGTGCTCAGAATCGTCCGGTCCCATTTGATATGGAGAGAGACAAAGAATCCGTCAAACAAGATATATCATGGGCAATTCATCGATAG 2193 0.3903 MNIAALLTSAGINIVVCCVLFSLYSILRKQPSNVNVYFGRKLANRSLKDLDLSFERFVPSPTWVMKACDTTQEELLDIGGVDAVVFSRMLVFSIRVFSVAAIICTILVLPVNYYGHDRIRKDLPFESLEAFTIENVQQGSRWLWTHCLALYIISLTTCSLLYFEYKSITNLCLMHITGLPPKPSQFTILVRGIPWSPENSYCEAVRKFFTYYHPTTYLSHQIVYKCGAVEKIKDDAEYICKMLGDGVEHSCKPSIVQCYFCGGTNSFKIIANETDSIHSRTGLTDVHIIARKKECAAAFVFFKTRYAALMAARNLQASNPMLWVTEQAPEPRDIYWSNLCIPYKQLWLRKIFTWVSSFTFVLLFLIPVTFAQGLTQLDKLEKMFPFLTDILQKKFIVQLVTGYFPSVILVLFLIGVGPMMMLLSAVEGPISRSSRKRSACYKVLYFTIWNVFFVNVFAGSVISQLSVFTSITELPSQLAKAVPTQATFFTTYVLSSGWASLAFEIIQPFALFCNIFQRLVLCSGQDSYNGTLTFPYHTEVPRILLFGFLGFTCSILAPLILPFLLFYFFLAYIVYRNQILNVYITKYDGGGQLWPIAFNTTIFSLVVAQVIALGVFGIKRSSIASGFTIPLLIGTFLFNQYCRQRFLPVFKNNAAQVFIDMDHRDTNSRRMDEIYDQLHSAYSQFSSNSPQPGCFGYPGDRERAQNRPVPFDMERDKESVKQDISWAIHR 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03743 730 Pfam Late exocytosis, associated with Golgi transport 6 164 IPR032880 -
Vifa2g03743 730 Pfam Calcium-dependent channel, 7TM region, putative phosphate 349 616 IPR003864 GO:0016020
Vifa2g03743 730 Pfam Cytosolic domain of 10TM putative phosphate transporter 185 338 IPR027815 -
Vifa2g03743 730 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 5 688 IPR045122 GO:0005227
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03743 Vifa-Chr2 1096294777 1096299518 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03743 K21989 - gmx:100789875 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03743 2 1096294777 1096299518 Vifa2g03743 2 1096294777 1096299518 ECH
Vifa3g04791 3 1382584691 1382592197 Vifa2g03743 2 1096294777 1096299518 PCT