Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03736 ATGGTGGACCCCTACGCGCTCGGATGGATCATATGCTCCTTTATCACCATCGTCGCTCTCTACAGTCTTGTTTTCAATCGTAAGAGTTCTTCCGAGGCTAACTCTCTGACCACGTCCGAGAATGTTACAACTGCCACCGGAGAATGCAGATCGTTTAATCCCGATGGGGACGTTGATATCGTCATTGTTGGAGCCGGTGTTGCTGGCTCCGCTTTAGCTTACACTCTCGGCAAGGATGGACGTAGAGTACTTGTTATCGAAAGAGATTTGAATGAACCAGACCGAATTGTTGGCGAGTTGCTACAACCTGGAGGCTATCTCAAATTGATTGAGCTAGGACTTGAAGATTGCGTGGAGAAAATTGATGCTCAACAAGTGTTTGGGTACGCTCTTTTCAAGGATGGGAAACATACAAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATTTCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGCGAAGGCTGCCTCCCTTCCCAATGTAAGATTGGAGCAAGGAACAGTTACTTCCCTGCTCGAAGAGCAAGCTACAATTAAAGGTGTGGCGTACAAAACAAAAGATGCGCAGGAATTATCGGCATGTGCACCTCTTACTATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTACCCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAAAACTGTGAACTACCATGTGCAAATCATGGTCATGTCATACTGGGAGATCCTTCGCCGGTTCTGTTCTATCCTATAAGTAGCACAGAAATTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAAGTATTTGAAGACAGTGGTAGCTCCACAGGTACCTCCTGAGCTTCATGATGCTTTCATAGCTGCAGTGGACAAAGGCAACATAAGAACAATGCCAAACAGAAGCATGCCAGCTGATCCTTATCCTACACCGGGAGCTCTTCTGATGGGAGATGCATTCAACATGCGCCATCCCCTAACTGGGGGCGGGATGACTGTGGCATTATCTGATATAGTAGTGCTGCGAAATCTTCTCAAGCCTTTGCGCGACCTGAATGATGCACCCAGCCTTTGTAAATACCTCGAATCCTTCTATACCTTGCGCAAGCCAGTAGCGTCCACCATAAATACGTTGGCTGGAGCACTATACAAGGTTTTTTGCGCATCACCTGATCCAGCAAGGAAAGAAATGCGTCAAGCTTGCTTTGATTACTTAAGCCTCGGGGGTTTATTCTCAGAAGGACCAGTCTCTTTGCTTTCAGGATTAAATCCTCGACCTCTGAGCTTGGTTCTTCATTTCTTCGCTGTGGCAATATATGGTGTTGGTCGTTTATTGTTACCATTTCCTTCCCCTAAACGCATATGGAGCGGAGTCAGATTAATCGCTAGCGCATCCGGAATCATCTTGCCCATAATTAAAGCAGAAGGAGTTCGTCAAATGTTCTTCCCTGCAACTGTTCCGGCTTATTACAGAACTCCTCCAGCTGCATAA 1569 0.4589 MVDPYALGWIICSFITIVALYSLVFNRKSSSEANSLTTSENVTTATGECRSFNPDGDVDIVIVGAGVAGSALAYTLGKDGRRVLVIERDLNEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDISGRSFHNGRFIQRMRAKAASLPNVRLEQGTVTSLLEEQATIKGVAYKTKDAQELSACAPLTIVCDGCFSNLRRTLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELHDAFIAAVDKGNIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWSGVRLIASASGIILPIIKAEGVRQMFFPATVPAYYRTPPAA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03736 522 Pfam Squalene epoxidase 209 481 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vifa2g03736 522 FunFam Squalene monooxygenase 2 52 432 - -
Vifa2g03736 522 Gene3D - 52 429 IPR036188 -
Vifa2g03736 522 SUPERFAMILY FAD/NAD(P)-binding domain 57 433 IPR036188 -
Vifa2g03736 522 Pfam FAD dependent oxidoreductase 59 89 IPR006076 GO:0016491
Vifa2g03736 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 208 223 - -
Vifa2g03736 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 59 81 - -
Vifa2g03736 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 351 367 - -
Vifa2g03736 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 - -
Vifa2g03736 522 PANTHER SQUALENE MONOOXYGENASE 11 520 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03736 Vifa-Chr2 1093241895 1093245339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03736 17 520 Miscellaneous Gene Families AT1G58440 76.877 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03736 K00511 - gmx:100820031 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03736 2 1093241895 1093245339 Vifa2g03736 2 1093241895 1093245339 ECH
Vifa3g04794 3 1382792669 1382796532 Vifa2g03736 2 1093241895 1093245339 PCT