Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03732 ATGAAGTCCATGAATGACAGTAACAACAACTCTGATGACAGAAACAATGATCATAACAACAACAATAATAACTGGTTGGGTTTCTCACTCTCACCCCATCATCATTATCATCATTACCAACAAACCCAAACTTCTTCAGTTTCCAACACTGTTTCTGTTCCCACTGCTTTCTATTTATCACCTTCTCATTTCACAAACTCACCTATCTGTTATGGTGTTCCTGATAATCCTAACTTCCATTCATCTTTGTCTGTTATGCCTCTTAAGTCTGATGGCTCTCTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAAGTGATGGTGTCATCTTCATCTCCTAAACTTGAAGACTTTCTAGGTGGTGCAACAATGGGGACTCATGATGAATATGGTAGCCATGAAAGAGATGCAGCAATGGCTTTAAGCTTAGACAGCATTTACTACAATAACCAACAAAATGCAGATCCTCATCAACAACAACAAAACCACATGGCATCACATCCATACTATGCAGCACTTGGTTTCCATGGAATGTTTCAAACACCATTAGAGGTGGAATCAAAGGAAACAGCAACAACAAATCATGTTGATGTTTGTAGTTCACAAATGCCTCAAAACTGGTTCTCTCAAAGAGACTATTCTTCTGCTTCTCAGACTCTTGAGCAACAAATGAACACAAACATGGGAAATAACAACAATGGTTCTATTGTTGGGTGTGGTGAGTTACAATCTCTGAGCCTATCAATGAGTCCTGGTTCTCAATCCAGCTGTGTTACTGCTCCAACACAGATCTCGCCTTCTGGAACTGAATCTGTAACCATGGAAGCTAAGAAAAGAGGTGCTGCTAAACTTGGGCAGAAGCAACCTGTTCATAGAAAATCTATTGATACTTTTGGCCAAAGAACTTCACAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGTCAAACAAGAAAAGGAAGACAAGTTTATTTGGGAGGTTATGATATGGAGGAAAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAATATTGGGGACCTTCAACTCATATAAACTTCCCACTAGAAAATTATCAAACTCAACTTGAGGATATGAAGAACATGACTAGGCAAGAATATGTTGCTCATTTGAGAAGAAAAAGCAGTGGATTTTCCAGAGGTGCTTCAATTTACAGAGGAGTGACAAGACACCACCAACATGGTAGGTGGCAAGCAAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTATCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGCTCGAACGCAGTAACAAATTTTGACATATCTAAATACGATGTTGAAAAAATCATGGCCAGCAATACTCTTCTGTCTGGTGAGCATGCAAGAAGAATCAAACAAAATGTTCCTAGAATCGATGTTCACGAAAATAATGACACAAATACGAAAGTAACGAGCCAGAACAATATCGGAGAGGCTGATCAAGCGCGAAACAGCAATGAAAGTAATGATTCAAAATGGAAGATGGTGTCAAATGGTTGTGACCAAAAGAACTCTGCTGGAAATTATAAGAATTCTGATTTTTCGATGTCTTTACAAGACCTTGTTGGTATTGAGTCAGTTGGTTTGGTTGATTCGACAAAGATTGGTGCTCATTTTTCGAATCCGTCTTCATTGGTGACAAGCTTAAGCTCTTCTAGAGAAGCTAGTCCTGATAAAACTGGTCCTTCTCAGCTTTTTCCAAAGCCTTCAATGGAAACAAAGATTGGTTCTAACATTGGTGTTAGTTCTTGGTTTCCTTCACAAGTAACAACTCAAATGAGACCAACTTCTTCTATCAATTTGTCACATTTTCCAGTTTTTGCTGCATGGAATGATGCCTAG 1956 0.3911 MKSMNDSNNNSDDRNNDHNNNNNNWLGFSLSPHHHYHHYQQTQTSSVSNTVSVPTAFYLSPSHFTNSPICYGVPDNPNFHSSLSVMPLKSDGSLCIMEALGRSQSQVMVSSSSPKLEDFLGGATMGTHDEYGSHERDAAMALSLDSIYYNNQQNADPHQQQQNHMASHPYYAALGFHGMFQTPLEVESKETATTNHVDVCSSQMPQNWFSQRDYSSASQTLEQQMNTNMGNNNNGSIVGCGELQSLSLSMSPGSQSSCVTAPTQISPSGTESVTMEAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYDVEKIMASNTLLSGEHARRIKQNVPRIDVHENNDTNTKVTSQNNIGEADQARNSNESNDSKWKMVSNGCDQKNSAGNYKNSDFSMSLQDLVGIESVGLVDSTKIGAHFSNPSSLVTSLSSSREASPDKTGPSQLFPKPSMETKIGSNIGVSSWFPSQVTTQMRPTSSINLSHFPVFAAWNDA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03732 651 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Vifa2g03732 651 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Vifa2g03732 651 MobiDBLite consensus disorder prediction 579 597 - -
Vifa2g03732 651 MobiDBLite consensus disorder prediction 496 537 - -
Vifa2g03732 651 MobiDBLite consensus disorder prediction 254 273 - -
Vifa2g03732 651 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 546 - -
Vifa2g03732 651 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Vifa2g03732 651 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
Vifa2g03732 651 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g03732 651 Pfam AP2 domain 407 457 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 MobiDBLite consensus disorder prediction 579 608 - -
Vifa2g03732 651 CDD AP2 304 371 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 MobiDBLite consensus disorder prediction 503 537 - -
Vifa2g03732 651 SUPERFAMILY DNA-binding domain 406 467 IPR016177 GO:0003677
Vifa2g03732 651 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 CDD AP2 406 467 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
Vifa2g03732 651 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
Vifa2g03732 651 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03732 Vifa-Chr2 1091044996 1091048012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03732 15 488 AP2-EREBP Transcription Factor Family AT4G37750 56.250 3.35e-165 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa2g03732 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03732 K09285 - gmx:100787223 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03732 2 1091044996 1091048012 Vifa2g03732 2 1091044996 1091048012 ECH
Vifa3g04801 3 1386294521 1386297439 Vifa2g03732 2 1091044996 1091048012 PCT