Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04388 ATGGGAAATTTGTTAGGTAAAAATAAAAAGCATGAGTCTCAGCAAAACCATTCTTCAAGGAATGATAAAGAAAAAGGTGGAAGAATCTCTTCTTCTAATTTTCAAACTCAAAATCAAAAACCTATCTCATTACCACTTCCACCGCCACAAGTTGCTTCTTCAATGTCTAAAATATCAAGTTTTGGTAAACAGGATTCTGGACAAAGCTCAAAAACCATGAAACCCACCAAGAAATATGCTTTGATTCCAGATAATTTCACTACTCTTGAACAGGTTATTGCGGCCCTTAGGAAAGAAGGTTTAGAGTCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGTAATGAATGGACTGGTAAAGTCTCATTCAATAATAGAAGCCTACATGCAATTGGAGAAACACCTAACCCCTATGAGAAGGCCATAACAATTATTGGCAAGACTTTGGCTCCCTTTGATGATGATAACTTGATTCCATGCTTTGGTTTTGGTGATGCTACTACACATGATCAACAAGTATTCAGCTTTCATAGTGATCATTCCCCTTGCCGTGGCTTTGAGGAAGTTTTGGATTGCTACAAAAAAGTTGTTCCAAACTTGAAACTCTCAGGACCAACTTCTTATGCTCCTGTGGTTGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGCCAATTTCATGTCTTGGTTATCATTGCAGATGGCCAAGTTACAAGAAGTGTAGATACTGATGATTATGAATTAAGTCCTCAAGAAGAGAAGACAATCAAAGCAATTGCTAATGCAAGTGCATATCCGCTTGCTATAGTTCTGGTTGGAGTTGGCGATGGACCTTGGGAAGACATGCAAAAGTTCGACGACAAGATTCCAGCTCGCGATTTTGATAACTTTCAGTTCGTTAATTTCACGAAGATTATGTCTAAAAACACAAGCCCTGCCGAGAAAGAAGCAACTTTTGCTCTAGCAGCTCTCATGGAGATCCCTTTCCAATACAAAGCATGCATCGAATTTCGAAAACTTGGACGCGTCACAGGAAGAGCAAAGAGAATAGTTCCAAAAGCTCCTCCTGTTATTTATTCTCGTCCTGCACCGACCATTTCGACAGCACCACCCATCTCGACAGCACCACCACCACCCATCTCGACAGCACCACCACCACCAACAACAATAGATGAACAAAATCAATTTGCCTGTCCTGTTTGTCTGACCGAAGGAAGAGATTTGGCGTTTGGATGCGGGCACATGACTTGCAGAGATTGTGCATCAAAGTTAAGTCATTGTCCAATATGTAGAGTCAGGATCACTAGTCGTCTTAGAGTATACAGTGGCTGA 1335 0.406 MGNLLGKNKKHESQQNHSSRNDKEKGGRISSSNFQTQNQKPISLPLPPPQVASSMSKISSFGKQDSGQSSKTMKPTKKYALIPDNFTTLEQVIAALRKEGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGETPNPYEKAITIIGKTLAPFDDDNLIPCFGFGDATTHDQQVFSFHSDHSPCRGFEEVLDCYKKVVPNLKLSGPTSYAPVVEAAIDIVEKSHGQFHVLVIIADGQVTRSVDTDDYELSPQEEKTIKAIANASAYPLAIVLVGVGDGPWEDMQKFDDKIPARDFDNFQFVNFTKIMSKNTSPAEKEATFALAALMEIPFQYKACIEFRKLGRVTGRAKRIVPKAPPVIYSRPAPTISTAPPISTAPPPPISTAPPPPTTIDEQNQFACPVCLTEGRDLAFGCGHMTCRDCASKLSHCPICRVRITSRLRVYSG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04388 444 MobiDBLite consensus disorder prediction 49 75 - -
Vifa1g04388 444 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
Vifa1g04388 444 MobiDBLite consensus disorder prediction 10 27 - -
Vifa1g04388 444 Gene3D von Willebrand factor, type A domain 102 317 IPR036465 -
Vifa1g04388 444 Pfam Zinc finger, C3HC4 type (RING finger) 397 437 - -
Vifa1g04388 444 PANTHER COPINE FAMILY PROTEIN 1 9 419 - -
Vifa1g04388 444 SUPERFAMILY vWA-like 104 286 IPR036465 -
Vifa1g04388 444 SMART VWA_4 103 306 IPR002035 -
Vifa1g04388 444 SMART ring_2 399 431 IPR001841 -
Vifa1g04388 444 MobiDBLite consensus disorder prediction 1 75 - -
Vifa1g04388 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 443 IPR013083 -
Vifa1g04388 444 Pfam Copine 128 342 IPR010734 -
Vifa1g04388 444 SUPERFAMILY RING/U-box 394 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04388 Vifa-Chr1 682017042 682020088 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04388 K16280 - gmx:100790153 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04388 1 682017042 682020088 Vifa1g04388 1 682017042 682020088 ECH