Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00632 ATGGTGGATCCGTACGTTCTTGGCTGGATTCTGTTTTCCTTTCTGAGTCTCTTTGCGCTCTACAGCCTCGCCTTCGGCGGAGAGACTCGGCATCGCGCTTCGCCGCCGAAGCCAGTAAACAGGATCGAGTTGTCGGAAACCGTGACCACCTCCACGAGTGAATGCAGATCGGATAAACGCGACGGCGACGCTGACGTCATTATTGTTGGAGCTGGTGTAGCCGGCGCAGCTCTGGCGCACACTCTCGGAAAGGATGGGCGTCGAGTACATGTGATTGAAAGAGATCTCAGTGAGCCTGACCGTATTGTTGGAGAGTTGCTACAACCAGGTGGCTATCTGAAATTGGTTGAGCTGGGGCTTGAAGACTGTGTAGACAAAATTGATGCTCAGCAAGTATTTGGTTATGCCCTTTTCAAGGATGGAAAACATACTCGTCTCTCTTACCCCTTAGAGAAGTTTCACTCAGATGTCAGTGGCAGGAGCTTTCACAATGGTCGTTTTATTCAGAGGATGCGGGAAAAGGCTTCCACCCTTCCCAACGTGCTATTAGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGACAATTAAAGGTGTGCAATATAAGAACAAAGATGGTCTGGAATTGAGAACATTTGCACCTCTTACCATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGTTCTCTTTGTAATCCTAAGGTGGAAGTTCCCTCATGTTTTGTTGGTTTACTTTTAGAGAACTGCGAGCTTCCATGCGCAAATCATGGCCACGTTATACTGGGAGACCCTTCACCCATTCTGTTCTATCGTATAAGTAGTACAGAGATTCGCTGTCTGGTCGATGTACCTGGTAAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGAAAAGTATTTGAAGACGACAGTAGCTCCACAGATTCCCCCTGAACTTTATGATGCCTTCGTAGCTGCTGTGGACAAGGGCAACATAAGGACAATGCCAAACAGAAGCATGCCGGCAGATCCTCTTCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACGGGAGGCGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTAAGACCCTTGCCTGACCTCAATGATGCACCCACACTCTGCAAGTACCTCGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACAATAAATACATTAGCAGGTGCGCTTTACAAAGTTTTTTGTGCATCCCCTGATCAGGCAAGGAAGGAAATGCGGCAAGCTTGCTTTGATTATCTAAGCCTCGGAGGCCTATTCTCCGAAGGACCTGTTTCTTTACTTTCTGGATTAAACCCTCGTCCCTTGAGTTTGGTTCTGCATTTCTTTGCCGTTGCAATATATGGTGTTGGCCGTTTATTGTTACCGTTTCCTTCACCTAAGAGAATATGGATTGGGGCCCGACTAATATCTGGTGCATCTGGAATCATCTTCCCCATAATTAAGGCTGAAGGGATTCGGCAAATGTTTTTCCCTGCTACTGTTCCAGCTTATTACAGAGCTCCCCCGGTTGGACAATAG 1590 0.4736 MVDPYVLGWILFSFLSLFALYSLAFGGETRHRASPPKPVNRIELSETVTTSTSECRSDKRDGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKASTLPNVLLEQGTVTSLVEEKGTIKGVQYKNKDGLELRTFAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLLLENCELPCANHGHVILGDPSPILFYRISSTEIRCLVDVPGKKVPSISNGEMEKYLKTTVAPQIPPELYDAFVAAVDKGNIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLPDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRAPPVGQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00632 529 SUPERFAMILY FAD/NAD(P)-binding domain 64 438 IPR036188 -
Vian7g00632 529 FunFam Squalene monooxygenase 2 58 438 - -
Vian7g00632 529 Gene3D - 58 437 IPR036188 -
Vian7g00632 529 PANTHER SQUALENE MONOOXYGENASE 23 526 IPR040125 GO:0004506|GO:0016126
Vian7g00632 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Vian7g00632 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Vian7g00632 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
Vian7g00632 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
Vian7g00632 529 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
Vian7g00632 529 Pfam Squalene epoxidase 214 487 IPR013698 GO:0004506|GO:0016020|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00632 Vian-Chr7 14322363 14326237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00632 46 529 Miscellaneous Gene Families AT1G58440 80.493 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00632 K00511 - gmx:100804406 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00632 7 14322363 14326237 Vian7g00632 7 14322363 14326237 ECH
Vian7g00632 7 14322363 14326237 Vian4g02162 4 38469979 38473373 PCT