Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00623 ATGAAGAGGTTCTCTGCGTGCTGCTTCACAAGCAGAATCTCTAAGTTTCACTCTCAAAGGAAGCATAACCAATCTCAATCTCAGATCATGGCAGGAAACATGTCTGATTCAAGTGGGAGCAAGGGTGCAAATATTTTACTTAATCATGACTTTTCTAGAGGGCTGAACTCTTGGCATCTCAATTCCTGCACTGGCTATGTAATTTCAGCTGAATCAGGTGCTCAAGGAGGAATATCGATGGAGTTGGGTGCTAATTATGTTGTTATTACTGACAGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCACTGGTTACACTTACACAGTTTTGGCTTGTGTGGGAGTATCCAGTGTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAATATCACGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGGAGAAGTTGGAAGGGAAATTCTCATTATCAACTATGCCTGATCGGGTTGTATTTTACTTGGAAGGACCTGCTCCAGGAGTTGATCTTCTCATACGATCAGTAGAAATAAATTGTTCCACTTCGAATAATAATAAGACCACTGGCCCAGCATGTGTTTCAGCGGGAGATGAGAACATCATCATCAACCCGCAATTTGATGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTGTGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAATCTGGGAAATTCTTTGCATCTGCGACAGAACGGACACAGAACTGGAATGGAATTCAGCAAGATATCACTGGACGCGTGCAGCGCAAACTGGCCTATGAGGTCACTGCTTTAGTTAGAATTTTTGGAAACAATGTCTCTACTGCTGATGTACGGGCTACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAGTATATAGGCATTGCAAATTTGCAGGCAACAGATAAGGATTGGGTTACTCTGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTACTTAGAGGGCCCCCCTCCAGGAACTGACATTCTTCTCAATAATTTGGTCTTAAAGCACGCAGCTAAAACACCTCCTTCAACCCCACCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTCAAAACAGCAATCTAGCTGATGGCACCAATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAAGTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCTTAAATGGGCGGTATATCCTAGTAACTAATCGAACACAAACATGGATGGGTCCAGCCCAGATCATCACTGATAAAGTGAAACTCTTTTTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACACGTGGCATGAAATAGGAGGGTCCTTCAGAATTGAAAAACAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTAGACTTAATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATACGTAAACGTGAGGTTGTACTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAAGACTTTGTTGACTTCATGGTGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACAGAGCCACAACAAGGGAACTTCAATTACAAGGATGCTGATGATCTGATAAGCCTGTGTCAGAAGCACAATATTCAAACTCGTGGTCATTGTATCTTCTGGGATGTGGATGGAGTGGTTCAGCAGTGGATCAAATCACTGAACAACAACGATTTGATGACGGCTGTCCAGAACCGCCTAAACGGGCTTCTGACTCGTTACAAGGGCAAGTTTAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGGCTAGGAAAGGATATAAGGGCTAACATGTTCAAAACTGCAAACCAGCTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAGGATGGATGTGACACCAGATCATGTCCTGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAAGGCCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTGCCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATATGTCAGAGCAGATGATCTTGAAGTTATGCTGCGTGAAGCCATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGATAATGCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTTCTAGCTCTAAAACAGGAGTGGCTCTCTCACAGCCGTGGCCATGTAGATGAACAAGGCCAATACAACTTAAGAGGCTTTCATGGAACATACAATGTCCAAGTTGTGACCCCATCAAAGAAAATTTCTAAGACATTTGTTCTTGACAAAGGTGACACGCCACTGGTGGTATCCATTGATTTATAA 2796 0.4253 MKRFSACCFTSRISKFHSQRKHNQSQSQIMAGNMSDSSGSKGANILLNHDFSRGLNSWHLNSCTGYVISAESGAQGGISMELGANYVVITDRKECWQGLEQDITDRISTGYTYTVLACVGVSSVSQGSSDVLATLKLEYHDSATSYLFIGRTSVNKDSWEKLEGKFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTSNNNKTTGPACVSAGDENIIINPQFDDGLNNWSGRGCKIVLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTLQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVTFGVNIIQNSNLADGTNGWFPLGNCTLSVKSGSPHIIPPMARDSLGPHELLNGRYILVTNRTQTWMGPAQIITDKVKLFLTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDDTWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKREVVLKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRSNIDNEDFVDFMVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLISLCQKHNIQTRGHCIFWDVDGVVQQWIKSLNNNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNLRGFHGTYNVQVVTPSKKISKTFVLDKGDTPLVVSIDL 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00623 931 Gene3D Glycosidases 577 887 - -
Vian7g00623 931 SUPERFAMILY Galactose-binding domain-like 386 546 IPR008979 -
Vian7g00623 931 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 579 874 IPR001000 GO:0004553|GO:0005975
Vian7g00623 931 PANTHER GLYCOSYL HYDROLASE 374 923 IPR044846 GO:0004553|GO:0005975
Vian7g00623 931 Pfam Glycosyl hydrolase family 10 588 845 IPR001000 GO:0004553|GO:0005975
Vian7g00623 931 FunFam Endo-1,4-beta-xylanase A 580 882 - -
Vian7g00623 931 SUPERFAMILY Galactose-binding domain-like 42 196 IPR008979 -
Vian7g00623 931 SMART glyco_10 625 875 IPR001000 GO:0004553|GO:0005975
Vian7g00623 931 Gene3D - 386 543 - -
Vian7g00623 931 Gene3D - 210 369 - -
Vian7g00623 931 Gene3D - 37 197 - -
Vian7g00623 931 SUPERFAMILY Galactose-binding domain-like 215 369 IPR008979 -
Vian7g00623 931 SUPERFAMILY (Trans)glycosidases 579 882 IPR017853 -
Vian7g00623 931 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Vian7g00623 931 Pfam Carbohydrate binding domain 217 353 IPR003305 GO:0016798
Vian7g00623 931 Pfam Carbohydrate binding domain 388 531 IPR003305 GO:0016798
Vian7g00623 931 FunFam Glycosyl hydrolase family 10 protein 212 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00623 Vian-Chr7 14141461 14146013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00623 1 931 Glycoside Hydrolase AT1G58370 66.386 0.0 1331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00623 - - gmx:100816678 1738.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00623 7 14141461 14146013 Vian7g00623 7 14141461 14146013 ECH
Vian7g00623 7 14141461 14146013 Vian4g02153 4 38359571 38363355 PCT