Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00460 ATGAAGTACGTGTTGGTGACAGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCAAGCAGTATTGGTGTGCTCCTTCAGGCCTGCGGCTTTCGAGTCACTTCTATCAAGATTGATCCCTATCTGAACACTGATGCAGGAACAATGTCTCCTTTTGAACATGGGGAAGTGTTTGTTTTAGATGATGGCGGTGAGGTTGACCTCGATCTTGGAAACTATGAACGTTTCCTGGACCTCAAGTTAACTCGTGACAATAATATTACAACTGGAAAAATTTACCAGTCTGTTATTGCAAAGGAGAGAAGAGGAGATTATCTTGGCAAGACCGTGCAGGTTGTTCCACACATTACTGATGCCATCCAAGAATGGATAGAGCGTGTGGCACAGATACCAGTTGATGGAAAAGAAGGCCCAGCTGATGTTTGTGTCATTGAGTTGGGTGGAACTATTGGGGATATTGAGTCCATGCCTTTTATTGAAGCACTTGGCCAATTTTCGTACCGTGTAGGCCCAGGAAACTTCTGTTTAGTTCATGTCAGCTTGGTTCCTGTTCTCAATGTTGTTGGTGAACAGAAAACAAAGCCAACTCAGCACAGTGTCCGTCAACTCAGAGGGTTAGGGTTGACTCCAAATCTTCTTGCTTGTCGTAGTTCAAAGGAACTTGATGACAATGTCAAGGAAAAACTTTCTCAATTTTGTCATGTTCCGTCATCAAGCATACTCACTCTCTATGATGTTCCAAATATTTGGCACATTCCTTTGCTGTTAAGAGACCAGAAGGCACACGAGGCAATCTTGAAAACGTTAAACCTTGGAGGTGTTGCTACAGAGCCCAATTTTAAGGAGTGGATTGCAACAACAAAAGTATATGACAAATTTAATGAATCTGTTAGAATTGCAATGGTGGGAAAATATACAAATCTTTCAGATGCATATCTTTCTGTACTGAAGGCACTTTTGCATGCTTCTGTTGCTTGCAACCGTAAGCTTGTTGTGGACTGGGTTCCTGCGGAAAATCTTGAAGATGATACCTCTAAGGAGGATCCTGATGCACATAAAGCTGCTTGGGCTCTTTTGAAGGGTGCTAATGGAATTCTAGTTCCAGGAGGATTTGGTGATAGAGGTGTGCAAGGAAAAATTCTTGCTGCAAAGTATGCTCGAGAAAACAGTGTTCCATTTCTAGGCATTTGCTTGGGGATGCAAATTGCTGTCATTGAGTTTGCAAGATCTGTTCTGGGTCTTCATGATGCTAATAGCACAGAATTTGATTCCAAAACTAAAAATCCATGTGTCATATTTATGCCAGAAGGTTCAAAGACTCATATGGGGGGAACTATGCGTCTCGGTTCTAGGAGAACTTACTTTCATGTTGCTGACTGCAAATCGGCCAAGTTGTATGGCAATGTACACTTTGTTGATGAGAGACATCGGCATCGATACGAGGTTAATCCTGACTTGATATCACAACTTGAGAGTGCTGGTCTGTCTTTTGTTGGCAAAGATGAAACAGGGAAGCGCATGGAGATAGTTGAATTTCCTGGCCATCCTTTCTTCATTGGTGCTCAATTTCACCCCGAGTTTAAGTCAAGACCAGGGAAACCTTCTCCTTTGTTCCTAGGGTTAATAACAGCAGCATGTGATAAGCCAGTTGTGCCTGCAAGCAAAGGGTATACCACAAAGATAACAAAAGGGATACTTGGTTCACACTCACCAATGTTGAAAGCACACAATGGAAATGGGTTCAAGTCTCCCAATAGTTCCTTAAATGGTGTATATACAAGTACAACTGCAAATGGGGTGTGTGTGGATGGTAGCTGTTAA 1824 0.426 MKYVLVTGGVVSGLGKGVTASSIGVLLQACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDLKLTRDNNITTGKIYQSVIAKERRGDYLGKTVQVVPHITDAIQEWIERVAQIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKEKLSQFCHVPSSSILTLYDVPNIWHIPLLLRDQKAHEAILKTLNLGGVATEPNFKEWIATTKVYDKFNESVRIAMVGKYTNLSDAYLSVLKALLHASVACNRKLVVDWVPAENLEDDTSKEDPDAHKAAWALLKGANGILVPGGFGDRGVQGKILAAKYARENSVPFLGICLGMQIAVIEFARSVLGLHDANSTEFDSKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFHVADCKSAKLYGNVHFVDERHRHRYEVNPDLISQLESAGLSFVGKDETGKRMEIVEFPGHPFFIGAQFHPEFKSRPGKPSPLFLGLITAACDKPVVPASKGYTTKITKGILGSHSPMLKAHNGNGFKSPNSSLNGVYTSTTANGVCVDGSC 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00460 607 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Vian5g00460 607 FunFam CTP synthase 1 292 - -
Vian5g00460 607 Gene3D - 1 292 IPR027417 -
Vian5g00460 607 NCBIfam CTP synthase (glutamine hydrolyzing) 1 545 IPR004468 GO:0003883|GO:0006221
Vian5g00460 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Vian5g00460 607 PANTHER CTP SYNTHASE 1 549 IPR004468 GO:0003883|GO:0006221
Vian5g00460 607 FunFam CTP synthase 295 554 - -
Vian5g00460 607 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Vian5g00460 607 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Vian5g00460 607 SUPERFAMILY Class I glutamine amidotransferase-like 297 548 IPR029062 -
Vian5g00460 607 Pfam Glutamine amidotransferase class-I 309 544 IPR017926 -
Vian5g00460 607 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Vian5g00460 607 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Vian5g00460 607 Gene3D - 294 554 IPR029062 -
Vian5g00460 607 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00460 Vian-Chr5 12388200 12394073 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00460 5 12388200 12394073 Vian5g00460 5 12388200 12394073 ECH
Vian11g01300 11 21298288 21303596 Vian5g00460 5 12388200 12394073 PCT
Vian5g00460 5 12388200 12394073 Vian11g01355 11 22208060 22213184 PCT