Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02164 ATGAAGGGCATGGACGAGCGTAACACCGATGATGGAAGCAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACATGGAGGTTACTTCAGCTGCCACTATTCCCAACCCCACTGTTCCGACAACGTTCTACATGTCCTCCCCTCACATTTCCAGCTCAGGAATCTGTTACGGTGTCGGGGGAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATCAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAATCGCAAGTGATGGCACCGAATTCTACGCCTAAATTGGAGGACTTTCTTGGTGGTGCAACTATGGGAACTCACGAATATGGGAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTACTATAGCACCCAAAATGCTCAGGCACAACCCAACAGAGTCACTCTCTCAGAATCCTTCAGGCAACAGGGGCATATGAACGTCCAAACGCACCCTTATTACTCAGGACTCGGTTGCCACGGGATGTATCAAGCACAGATGGAGGATGAAGCAACGAAGGAAGCTCACGCATCAGTTTGCAGCTCCCTAATGCCTCAAATGACAGAAGATAGTTTGAAAAACTGGATGGCTTCAAGGGAATATTCAACTCATCAGCAGGTTTTGGAGCAGGAAATGAACTGTGGAATGGGGAATGAAGCAAGTGGCATGTCTCTTGGAACTGTGGGGTGTGGCGAGTTACAGTCACTGAGTTTATCGATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCACCTTCTGGGCCTGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGTTGGGTCAAAAGCAACCAGTGCACAGGAAATCTATTGACACATTTGGGCAGAGAACCTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCCACGCATATAAATTTTTCGATTGAAAATTACCATGTTCAACTCGAAGAAATGAAGAGCATGAGCAGGCAGGAATACGTTGCACATTTACGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACACGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACACAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTCACGAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCGAGTATTAATCTTCTCGCAGGTGAGCTAGCAAGGAGAAATAAAGATAATGATCCAAGAAACGAGGCGAGGGAGTGCACTATGAAAAACAATAACAAGAGTGTGATGACAAGTGAGAGCCAGGAGGAAATAGTCGAAGGTAGAAACAGCAATGAAAACAATCCAGAGTGGAAAATGGTTTTGTTTAATCAAGCTTCACAGCAGCAACAGTCAAATGGCAGTGAGGAAAAAATAATGAACTGCGGAAATTATAGAAACAGTGCATTCTCTGGGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGAGGAGTGTAGCAAAATTGGGACTCATTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCTCCATGGAAACAAAGTTATTGAACCCCATTAGTACTAGTGTTACATCTTGGTTACCCTCACCAACGGTTCAAATGAGACCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1980 0.4631 MKGMDERNTDDGSNHNWLGFSLSPHMNMEVTSAATIPNPTVPTTFYMSSPHISSSGICYGVGGNGNFHSPLTVMPIKSDGSLCILEALNRSQSQVMAPNSTPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAQAQPNRVTLSESFRQQGHMNVQTHPYYSGLGCHGMYQAQMEDEATKEAHASVCSSLMPQMTEDSLKNWMASREYSTHQQVLEQEMNCGMGNEASGMSLGTVGCGELQSLSLSMSPGSQSSCVTAPSGPDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYHVQLEEMKSMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEARECTMKNNNKSVMTSESQEEIVEGRNSNENNPEWKMVLFNQASQQQQSNGSEEKIMNCGNYRNSAFSGALQDLIGIDSVEECSKIGTHFSNASSLVTSLSSSREASPEKTGPSLLFPKPSMETKLLNPISTSVTSWLPSPTVQMRPPPAISLSHLPVFAAWTDT 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02164 659 FunFam AP2-like ethylene-responsive transcription factor 403 464 - -
Vian4g02164 659 SMART rav1_2 404 468 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 SMART rav1_2 305 374 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 SUPERFAMILY DNA-binding domain 304 370 IPR016177 GO:0003677
Vian4g02164 659 PRINTS Ethylene responsive element binding protein signature 444 464 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 539 - -
Vian4g02164 659 ProSiteProfiles AP2/ERF domain profile. 305 368 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 CDD AP2 304 367 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 SUPERFAMILY DNA-binding domain 403 464 IPR016177 GO:0003677
Vian4g02164 659 CDD AP2 403 464 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 Gene3D AP2/ERF domain 304 370 IPR036955 GO:0003700|GO:0006355
Vian4g02164 659 Gene3D AP2/ERF domain 404 464 IPR036955 GO:0003700|GO:0006355
Vian4g02164 659 ProSiteProfiles AP2/ERF domain profile. 404 462 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 Pfam AP2 domain 305 360 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 Pfam AP2 domain 404 454 IPR001471 GO:0003700|GO:0006355
Vian4g02164 659 FunFam AP2-like ethylene-responsive transcription factor ANT 304 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02164 Vian-Chr4 38495133 38498255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02164 10 488 AP2-EREBP Transcription Factor Family AT4G37750 50.881 4.07e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vian4g02164 AP2 4.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02164 K09285 - gmx:100787223 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02164 4 38495133 38498255 Vian4g02164 4 38495133 38498255 ECH
Vian7g00637 7 14401967 14405520 Vian4g02164 4 38495133 38498255 PCT