Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02153 ATGGAGGGAAACGTATCTGGTCCTAGTGGGAGCCATGCTACTAATATTTTAATAAACCATGACTTTTCTGATGGGCTAAACGCCTGGCGTCCCAATGACTGTCATGGCTATGTAGTTTCATCTGAATCAGGCTCTCAAGAAGCAATGACAGTAGGATTAGATGGTAATTACGCTGTGATCACAGACCGTAGGCAATGCTGGCAGGGTTTAGAGCAAGATATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTATATGGGCGTACTCCTGATTATACTCCTGTTAAAGCTACTCTTGAACTAGAACGTCACGGTTCAGACCCTGGCTACTTGGAGATTGGAGGAACTTATTGCATGAGGGGCAGCTGGAAAAAGTTAGAAGGGTCGTTTTCGTTGTCAACTATGCCTGATCGAGTTATATTTTATTTGGAAGGACCTTCTCCCGGAGTTGATCTGCTTATAAAATCAGTGAACATCCAAGAACTTAAATTCGATGATGAAAACATCATAATAAATCCCCAGTTTGATGATGGCCTGAATAGTTGGACTGGAAGAGGCTGCAAGATTGCCTTACATGACTCCATGGGAGATGGGAAGATTCTTCCGAAGTCTGGTAAATTCTTTGCAGCTGCAACAGAACGTACCCAAAGCTGGAACGGAATTCAGCAGGAGATCACAGGAAGAGTGCAGCGCAAGCTTGCCTATGAGGTTACTGCATTAGTTCGGATATTTGGGAACGGTGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCGGATCTTCGCGAGCAGTATATAGGCATTGCCAAGTTAGCAACAGATAAAGATTGGGTCCAAATGCAAGGAAAATTCCTCCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCTCCTGCGGGCACTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGCTAAAACACCACCTTCAACACCACCAGATTGTGAGATTGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGGTGATGGCACCAATGGATGGTTTCCACTTGGGAGTTGTACTTTGAGTATTGGGAGTGGTTCACCGCGTATAATTCCATCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTGAGCGGCCGCTACCTTCTTATAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGGGTCGGTTCCGGATCAACTGGGCCTCAGAATGTTAATGTTGCCCTTAGCGTTGATGATCAGTGGGTCAATGGAGGTCAAATTGAGATTGCTGATGGCAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGGCATCTAAGGTTATGGTTTATATTCAAGGACCTTCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTTGCTGTTGATAGACAATCAAGGTTTAAGTATCTGAGGAGGCAGACAGAAAAGATCCGTAAGCGTGATATTACTCTAAAATTCTCTGGGCTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTCAGACAAATAAAAAATGATTTTCCCATGGGAACGTGCATTAGTAGAAGCAATATTGACAATGAAGATTTTGTGGACTTTTTTGTGAAACATTTTAACTGGGCAGTTTTTGGTAATGAGTTGAAGTGGTACTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCTGATGAAATGCTAGACTTATGCCAGAAAAACAAGATAGACACTCGGGGCCATTGTATCTTCTGGGAAGTAGACGGCACTGTTCAGCAATGGGTCAAATCACTGAATAAAACTGATTTGATGAAAGCTGTCCAAAATCGCCTGAATGGCTTATTGACTCGCTACAAGGGTAAATTCAGACACTATGATGTCAACAACGAAATGTTGCACGGTTCGTTTTATCAGGACAAACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACAGCACACCAACTGGATCCATCTACTACTCTTTTTGTGAATGACTATCATGTTGAAGATGGATGTGACACCAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAACAGCAAGATGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGACCTATTGTCTGTTCTGCCCTTGATAAATTGGGCATTCTTGGTATACCAATCTGGTTTACTGAGCTTGATGTGTCTTCCACCAATGAATATGTCAGAGCTGATGATCTTGAAGTTATGCTGCGGGAAGCTATGGCACACCCTGCCATAGATGGTGTAATGCTCTGGGGTTTTTGGGAGTTGTTTATGAGCCGGGAAAATTCACACCTGGTGAATGCCGAAGGAGAACTCAACGAAGCTGGGAAAAGATTCCTTTCTCTCAAACAAGAGTGGTTATCTCACAGCCATGGTTATGCTGATGCGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTCGAAGTTGTCACCTTAGCAAAGAAAGTTTCTAAGACATTCGTTGTTGACAAGGGTGACTCCTCAGTGCTGGTATCGATCGATTTATAA 2667 0.4278 MEGNVSGPSGSHATNILINHDFSDGLNAWRPNDCHGYVVSSESGSQEAMTVGLDGNYAVITDRRQCWQGLEQDITDKISVGSTYMVSAFVGVYGRTPDYTPVKATLELERHGSDPGYLEIGGTYCMRGSWKKLEGSFSLSTMPDRVIFYLEGPSPGVDLLIKSVNIQELKFDDENIIINPQFDDGLNSWTGRGCKIALHDSMGDGKILPKSGKFFAAATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNGVTTSDVRATLWVQAPDLREQYIGIAKLATDKDWVQMQGKFLLNGSPSKVVVYLEGPPAGTDILVNTLVIKHAAKTPPSTPPDCEIAAFGVNIIENSNLGDGTNGWFPLGSCTLSIGSGSPRIIPSMARDSLGPHESLSGRYLLITNRTQTWMGPAQMITEKLKLFLTYQVSAWVRVGSGSTGPQNVNVALSVDDQWVNGGQIEIADGRWHEIGGSFRIEKQASKVMVYIQGPSSGVDLMIAGLQIFAVDRQSRFKYLRRQTEKIRKRDITLKFSGLDSIGNLGTLVRVRQIKNDFPMGTCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWEVDGTVQQWVKSLNKTDLMKAVQNRLNGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGKDIRANMFKTAHQLDPSTTLFVNDYHVEDGCDTRSSPEKYIQHILDLQQQDAPVGGIGIQGHIDSPVGPIVCSALDKLGILGIPIWFTELDVSSTNEYVRADDLEVMLREAMAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRFLSLKQEWLSHSHGYADAQGQFSFRGFSGTYNVEVVTLAKKVSKTFVVDKGDSSVLVSIDL 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02153 888 Gene3D Glycosidases 536 842 - -
Vian4g02153 888 SUPERFAMILY Galactose-binding domain-like 173 326 IPR008979 -
Vian4g02153 888 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 536 831 IPR001000 GO:0004553|GO:0005975
Vian4g02153 888 FunFam Glycosyl hydrolase family 10 protein 170 325 - -
Vian4g02153 888 SMART glyco_10 582 832 IPR001000 GO:0004553|GO:0005975
Vian4g02153 888 FunFam Endo-1,4-beta-xylanase A 537 839 - -
Vian4g02153 888 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 759 769 IPR031158 -
Vian4g02153 888 SUPERFAMILY Galactose-binding domain-like 14 168 IPR008979 -
Vian4g02153 888 Gene3D - 9 170 - -
Vian4g02153 888 Gene3D - 339 501 - -
Vian4g02153 888 Gene3D - 171 326 - -
Vian4g02153 888 Pfam Carbohydrate binding domain 345 488 IPR003305 GO:0016798
Vian4g02153 888 Pfam Carbohydrate binding domain 175 311 IPR003305 GO:0016798
Vian4g02153 888 Pfam Carbohydrate binding domain 15 154 IPR003305 GO:0016798
Vian4g02153 888 Coils Coil 814 834 - -
Vian4g02153 888 PANTHER GLYCOSYL HYDROLASE 331 880 IPR044846 GO:0004553|GO:0005975
Vian4g02153 888 SUPERFAMILY (Trans)glycosidases 539 839 IPR017853 -
Vian4g02153 888 Pfam Glycosyl hydrolase family 10 545 802 IPR001000 GO:0004553|GO:0005975
Vian4g02153 888 SUPERFAMILY Galactose-binding domain-like 343 503 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02153 Vian-Chr4 38359571 38363355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02153 4 888 Glycoside Hydrolase AT1G58370 67.447 0.0 1282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02153 - - vum:124843466 1488.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02153 4 38359571 38363355 Vian4g02153 4 38359571 38363355 ECH
Vian7g00623 7 14141461 14146013 Vian4g02153 4 38359571 38363355 PCT