Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00181 ATGGCTTCTTTTCCTCTTTACAAGCCAACCCACACCATTTTCTCCAATACCCAGTTCAAGGGCTTGCGCAATGGCTTTTTCTGGCGACCCTCTTACTCCTTTGAGGCTCTTCCTGAAAACAAAGTACAACCCATTAGAGCTTTGGTTGCTAAATCCCCATTTGCCCTGTTTCAACCTCCCCAAGTTGAAGAAGAGTCACCGTCTGAGTTGGAGCCCGTGGATCCTGACTTCTACAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGTGTTCAATTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGGATATAATTCCCTTGGATCATCCAATATTTGATATTATTAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATCCCTTCTCCTATTTGCATTTGACTGTGAAGGCAACTTCTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCCTACTTCTAGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATCCCAATCTCGCTTCCACCATTAGAAAACAGCAACAAAGAGCCTTAGAATTCTGGCACAAGCATTGGCACAGTGAAGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAGTTGGTGCGCTAAATCAAGAAGCAAACATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGTGTTAGAAAAGGAGATGAGATGACAGTTAATTACATGAGTTCGCAGAAGAATGACATGTACATGCAAAGATATGGATTTTCGTCACCTGTGAACCCATGGGATGAGGTACAGTTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATTTCTGGCCTTCGCGAAGAGTATTACCATAACAACGATTTGTCAACGGATGGCAATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAAGTTGGTCAGACGGGGATGTTCCTCCAATTCCTAGTGTGGAAAGAGAGGCTGTGAAGGAGTTGCAAAGTGAATGCCAAAAGATGCTGGCAGGATTTGTTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCCATGACAGATGCTACGAGGACATTTGAAGCTGCAATTAGGTATAGATTGCACAGAAAATTGTTGATGGAGAAAGTTATCAAAGCATTAGACATGTACCAAGAGAAAATACTGTTCTAA 1449 0.4265 MASFPLYKPTHTIFSNTQFKGLRNGFFWRPSYSFEALPENKVQPIRALVAKSPFALFQPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLASLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQQRALEFWHKHWHSEAPLKIKRLARDPQRFIWAVSIAQSRCINMQMRVGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDMYMQRYGFSSPVNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNDLSTDGNTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQSECQKMLAGFVTTSKQDQKLLDSMTDATRTFEAAIRYRLHRKLLMEKVIKALDMYQEKILF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00181 482 CDD SET_LSMT 90 337 - -
Vian4g00181 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 455 - -
Vian4g00181 482 Gene3D - 359 480 IPR036464 -
Vian4g00181 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
Vian4g00181 482 FunFam Plastid transcriptionally active 14 359 479 - -
Vian4g00181 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vian4g00181 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vian4g00181 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Vian4g00181 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vian4g00181 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g00181 SET 2.3e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00181 4 1668146 1675394 Vian4g00181 4 1668146 1675394 ECH