Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00206 ATGTTCCCTTCTTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCGTCTTCTTCTGCTGCGCCCTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCTGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCGACTAATTATCATGCTCCGATTCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCGCTGCGGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCTGCGAAGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCTAAGAAGGCGATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCCTCATCTTCGGATGGTGAAGTGGTTTCTGTCATCCACCAAGACCAACGACAGCAACAAGGGATGGACTTTGAAGAGGGGAAGTTGAAAGAAGCTGCCTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAGGACTAGTTGCAAGATACTGTGCAGTGGTGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCATCAAATCCTGAACCAATTAAGGTCACCCCTTCAACTTCATCCTCAAGATGTAGATGGAGGAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGCTGCCAATGGACGCTCCACCTTTTGTGCGATAGCCAGCATGAATCTATCTGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1101 0.4668 MFPSSNYTSSGSYPRFPSSSSSAAPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPIPETLANWAVADCAAAAMLNQDLGGALYGITKKPAKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQDQRQQQGMDFEEGKLKEAAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKCPATENHQILNQLRSPLQLHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNAANGRSTFCAIASMNLSAGLQIFGKSWEECTNPHPT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00206 366 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Vian2g00206 366 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Vian2g00206 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 92 330 IPR005333 GO:0003700
Vian2g00206 366 Pfam TCP family transcription factor 98 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00206 Vian-Chr2 2055451 2056655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00206 43 225 TCP Transcription Factor Family AT1G67260 38.916 2.23e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian2g00206 TCP 9.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00206 - - gsj:114424268 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00206 2 2055451 2056655 Vian1g00901 1 9422979 9424396 ECH
Vian2g00206 2 2055451 2056655 Vian2g00206 2 2055451 2056655 ECH
Vian4g00617 4 7453796 7454616 Vian2g00206 2 2055451 2056655 ECH