Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00901 ATGTATTCTTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAAGATCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACATCACCATGACTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGATTCTCAAAAAACCTTCACGTTGCTCCCGAAATCCCCGCAACTCCCTCCTTCGGACAAGGTGGCGCCGCCCCTATGGACCACACTACAAGAAAGAGGTCCTGCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCGACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTCGTGAGTGGAGTTAACGAGGAGCAAGAGAGGCAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAATAGAGAAGATGAGGACTCGAAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCACACCTTCCCGAGGCCGAAGAACCAACTTCTCACGCTAAGGAACATTTGGAGGACATAGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTAAACAACTCAGCAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGATCACATCTAG 1110 0.473 MYSSNTSLNGNDLLSYPSQPFCFRPFSFESNPTNSSKDQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDFLLLHPSLADPGFSKNLHVAPEIPATPSFGQGGAAPMDHTTRKRSCKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERQTPNMKRRTSKVCRKSAFNTIDKESREKARERARERTIEKMRTRRVLAADASNLNRLSSWNPFETVEDSAGTQSQSVNHPSLDAHLPEAEEPTSHAKEHLEDIARHEDNSLVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSLGKPWETYNDHI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00901 369 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 103 366 IPR005333 GO:0003700
Vian1g00901 369 MobiDBLite consensus disorder prediction 97 123 - -
Vian1g00901 369 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Vian1g00901 369 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Vian1g00901 369 Pfam TCP family transcription factor 118 258 IPR017887 -
Vian1g00901 369 MobiDBLite consensus disorder prediction 208 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00901 Vian-Chr1 9422979 9424396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00901 114 252 TCP Transcription Factor Family AT3G18550 43.671 2.36e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian1g00901 TCP 6.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00901 - - vra:106767828 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00206 2 2055451 2056655 Vian1g00901 1 9422979 9424396 ECH
Vian4g00617 4 7453796 7454616 Vian1g00901 1 9422979 9424396 ECH
Vian1g00901 1 9422979 9424396 Vian1g00901 1 9422979 9424396 ECH