Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01370 ATGGGCAACCTCTTTGGCAAAAATAAAAAGCATAGCACTCATAGTTCAAGCCATGATAAAGGAAGAGGTGGAGGAATCTTCACCACCACAAGAGGTTTACCACCCAATTTTCCATCGCAAATATCTTCCTCCTTGCCACCACCATTATTATATCCATCTCTGGAACCACCTTCTTCGACGGCACCACCACCACCGATGCGATCACGATCCGTTTCCAAGAAACCAAGTTTTCTGAGAGTTGACTCTAAACAGAGCTCTTCAGTCATGGACAAAAAGCAATCTGCAGCCAAAAAGTATGCTCTTATCCGTGACAACTTCTCTACCCTTGAACAGGTGACAACGGCCTTGAGGAAAGAAGGATTAGAATCCTCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAGTGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAACTACACCTAATCCTTATGAGAAGGCCATCTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACTACCCATGATCAAGAAGTATTTAGCTTTCACAGTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAGTCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTCAACACTGGAGATGGAGAACTAAGTCCGCAGGAAGAGAAGACAATTAAAGCCATAGTTGATGCAAGTGCATATCCTCTTGCAATAATTCTAGTTGGAGTTGGTGATGGACCCTGGGAAGACATGAGAAAGTTCGATGACAGGATACCTGCACGCGATTATGACAATTTTCAGTTTGTAAATTTCACGGAAATAATGTCGAGAAACATAAGCCCATCGGAGAAAGAAGCAGCTTTTGCTTTGGCTGCTCTCATGGAGATTCCATTCCAATATAAAGCAACGATGGAATTTGGAATACTTGGACGTGTGACAGGAAGAGCCAAGAGAATAGTTCCAAAAGCTCCTCCTCTACCATATTCTAGGCCTACACCATCACTAGCTCGTCTTCCCACCACTGCACCACCTTCCTCCACTGATGACAACAACCAATCGGTTTGTCCTGTTTGTTTGACCAATCCAAGAGACTTGGCCTTCGGGTGTGGTCACATGACTTGCAAGGATTGTGGATACAAGTTAACTAATTGTCCCATGTGTCGAGAGAGGATCACTACTCGTCTGAGGGTGTACAGTGGATGA 1359 0.4356 MGNLFGKNKKHSTHSSSHDKGRGGGIFTTTRGLPPNFPSQISSSLPPPLLYPSLEPPSSTAPPPPMRSRSVSKKPSFLRVDSKQSSSVMDKKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGTTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIILVGVGDGPWEDMRKFDDRIPARDYDNFQFVNFTEIMSRNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPKAPPLPYSRPTPSLARLPTTAPPSSTDDNNQSVCPVCLTNPRDLAFGCGHMTCKDCGYKLTNCPMCRERITTRLRVYSG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01370 452 SUPERFAMILY vWA-like 124 307 IPR036465 -
Vian11g01370 452 MobiDBLite consensus disorder prediction 1 91 - -
Vian11g01370 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 451 IPR013083 -
Vian11g01370 452 MobiDBLite consensus disorder prediction 32 47 - -
Vian11g01370 452 SUPERFAMILY RING/U-box 401 446 - -
Vian11g01370 452 MobiDBLite consensus disorder prediction 49 64 - -
Vian11g01370 452 MobiDBLite consensus disorder prediction 386 403 - -
Vian11g01370 452 MobiDBLite consensus disorder prediction 75 91 - -
Vian11g01370 452 ProSiteProfiles Zinc finger RING-type profile. 407 440 IPR001841 -
Vian11g01370 452 MobiDBLite consensus disorder prediction 374 403 - -
Vian11g01370 452 Pfam Zinc finger, C3HC4 type (RING finger) 404 445 - -
Vian11g01370 452 PANTHER COPINE FAMILY PROTEIN 1 76 427 - -
Vian11g01370 452 SMART VWA_4 123 325 IPR002035 -
Vian11g01370 452 Pfam Copine 148 360 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01370 Vian-Chr11 22680190 22690878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01370 K16280 - gmx:100790153 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01370 11 22680190 22690878 Vian11g01370 11 22680190 22690878 ECH
Vian11g01370 11 22680190 22690878 Vian5g00470 5 12880102 12889039 PCT