Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01300 ATGAGAAGTAAGAGTTGTCTTGTGTGTCTTGTATCTCTTGCTATTGCTACCCTTTTTGGCAATGGCACTGCAACTGCAACTGAAAGTGTGAAGCCAAGCCACTATGCTTCAACATTCAACAGAACCCTATTTCCTTCCACTTTCATCTTTGGTGTAGGTTCTTCTGCTTACCAGGCAGAAGGAGCAAGAAATGTAGATGGAAGAGGACCATGTATTTGGGACACCTTCACTGAACAGCATCCAGAAAAAATTTGGGATCACAGCACTGGTGATGTTGGAGCTGACTTTTATCATGGCTACAAGGCTCATCAAAAGGGACAAATTGGGATTACCTTACCGACTCACTACTTTTTGCCGAAATCTCAGAGTGTTGCTGATGAGGGAGCTGCAAGTAGAGCTCTAGACTTTTTCTTTGGTTGGTATGCTCATCCGGTTACATATGGTGACTATCCTGAAAGTATGAAATCTTTAGTGGGTGCTAGACTTGCTAAATTCACAAAAGCTGAATCTGAAGGCCTAAGAAAATCCATCGATTTTCTTGGTGTGAATTACTACACCACATATTATGCAGAAAATGCTGCACCAGTCAGCACCAACAGGACCTTCTACACAGATATACTAGCCACTCTAACTACGGAAAAGAATGGTGAAGCTATTGGAACTCCGACGGATTTGGATTGGCTCTTCGTATATCCGAAGGGAATTCACTATCTTATGGTATACATAAGGGACAAATACAAGAATCCAAATATTTACATCACTGAAAATGGTGTTGCTAAAGCAAGGGATGATTCAATAGCAGTGGATGAAGCCCTCAAGGATGGTATCAGGATTAGATACCTTATTGGCCATCTTCATTTCCTTCTTCAGTCCATCAAGGAAGGTGTTAATGTGAAGGGATACTATGCATGGTCATTTTCAGACAGCTTTGAATGGGATGCTGGTTACACAGTTCGATTTGGACAGATATATGTGGATTACAAGAACAATATGAAAAGATACCTAAAGTTCTCTTGTTTTTGGCTCAAAAACTTCCTTCTCAACTGA 1047 0.4088 MRSKSCLVCLVSLAIATLFGNGTATATESVKPSHYASTFNRTLFPSTFIFGVGSSAYQAEGARNVDGRGPCIWDTFTEQHPEKIWDHSTGDVGADFYHGYKAHQKGQIGITLPTHYFLPKSQSVADEGAASRALDFFFGWYAHPVTYGDYPESMKSLVGARLAKFTKAESEGLRKSIDFLGVNYYTTYYAENAAPVSTNRTFYTDILATLTTEKNGEAIGTPTDLDWLFVYPKGIHYLMVYIRDKYKNPNIYITENGVAKARDDSIAVDEALKDGIRIRYLIGHLHFLLQSIKEGVNVKGYYAWSFSDSFEWDAGYTVRFGQIYVDYKNNMKRYLKFSCFWLKNFLLN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01300 348 PANTHER GLYCOSYL HYDROLASE 44 101 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 Pfam Glycosyl hydrolase family 1 102 345 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 Pfam Glycosyl hydrolase family 1 42 101 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 Coils Coil 346 348 - -
Vian11g01300 348 Gene3D Glycosidases 102 348 - -
Vian11g01300 348 ProSitePatterns Glycosyl hydrolases family 1 active site. 251 259 IPR018120 -
Vian11g01300 348 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
Vian11g01300 348 PRINTS Glycosyl hydrolase family 1 signature 176 190 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 PRINTS Glycosyl hydrolase family 1 signature 319 331 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 PRINTS Glycosyl hydrolase family 1 signature 274 285 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 PRINTS Glycosyl hydrolase family 1 signature 251 259 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 PRINTS Glycosyl hydrolase family 1 signature 295 312 IPR001360 GO:0004553|GO:0005975
Vian11g01300 348 Gene3D Glycosidases 22 101 - -
Vian11g01300 348 SUPERFAMILY (Trans)glycosidases 44 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01300 Vian-Chr11 21298288 21303596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01300 100 348 Glycoside Hydrolase AT2G44480 47.200 1.68e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01300 K22279 - gmx:100812639 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01300 11 21298288 21303596 Vian5g00460 5 12388200 12394073 PCT