Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00847 ATGAAATCCATGAATGACAGTAACTCTGATGACAATcataacaacaataacaactgGTTAGGTTTCTCTCTCTCACCCCACATCAAAATTGGTGATgaactttcttcttctcctcttcatAATCATTACCAACAACAAACTCATCCTTCTTCAGCTTCCAACACTGTTCCTACATCTTTCTATTTTTCACCTTCTCATTTCACTAACTCTGCTATCTGCTATGGTGTTCCTGAAAATGCTAACTATCACTCACCTTTAACTGTTATGCCTCTTAAGTCAGATGGGTCTCTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAAGTGATggtgtcatcatcatcatcatctccaaAACTAGAGGATTTTCTAGGTGGTGCAACAATGGGAACTCATGATGAATATGGTAGCCATGAAAGAGAAGCAATGGCTTTAAGCTTGGATAGTATTTACTATAATGGTCAACAAAATGCAGATCCTCATCAAGCTAATAGAGATCATTCTCTTGATCTTCTTTCAGAATCTTTTAGACAACAAACATCATCACATCCATATTATGCAGCACTTGGTTATCATGGAATGTTTCAAACACCATTAGAGGTAGTAGAATCAAAGGAAAACACAAACATTGTTGATGTTTGTAGTTCTCAAATGCCTCAAAACTGGGTGTCATCAAGAGATTATTCTTCTTCTGCTTCTCAGCTTTTGGAGCAACAAATGAACAATGGTGGAGctgctggtggtggtggtggtggtggtgatggtggtggttCTGTTGGTACTGTAGGGTGTGGTGAGTTACAATCTTTAAGCCTTTCAATGAGTCCTGGTTCTCAATCTAGTTGTGTTACTGCTCCTAGTCAGATCTCACCTACTGGAACAGAATCAGTGACTATGGATGCTAAAAAAAGAGGAGCTTCTAAGCTTGGACAGAAGCAACCTGTGCATAGGAAATCTATTGACACTTTTGGACAAAGAACTTCACAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGACAAACTAGAAAAGGAAGACAAGTATATTTGGgTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCTTCAACACATATAAACTTCCCGtTAGAAAATTACCAAACTCAACTTGAGGAAATGAAGAACATGACTAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGCAGTGGTTTCTCTAGGGGTGCTTCAATGTACAGAGGAGTCACAAGGCACCATCAACATGGTAGGTGGCAAGCTAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCCGCGGATCGAATGCTGTCACAAATTTTGACATCTCTAAATATGATGTTGAAAGGATCATGGCTAGTAATACTCTTCTGTCCGGCGAACACGCAAGGAGAATCAAAGATAACGTTGTTGCAAGAACCGATGTTATCGAATATAACAACGATACTAACGTATCAAGCCAGAACAACGGAGAAGCTGCTCAAGTGCGAAACAATGAAAATGATTCTAAATGGAAGATGGTATCAAATAATTGTGACCGAAAAAACGATGTGAATTCTGGTGGAAGTTACAAAAATTCTGATTTCTCTATGTCTTTACAAGACCTTGTTTCTGGCCAACAACATGTGTTGGATGATTCTAACAAAATTGGGACTCATTTTTCAAATCCATCTTCATTGGTGACAAGTTTAAGCTCTTCAAGAGAAGCTAGTCCTGATCATAAAACTGGTCCTTCTCTACTTTTTCCAAAGCTTTCAATGGAATCAAAAATTGCTACTAATGGTGTTGGTGTTAGTTCTTGGTTTCCTTCACAAGTAACAAATCAAATGAGGCCAACTTCTTCTATCAATTTGTCACATTTTCCAGTTTTTGCTGCATGGAACGATgcctag 2037 0.3628 MKSMNDSNSDDNHNNNNNWLGFSLSPHIKIGDELSSSPLHNHYQQQTHPSSASNTVPTSFYFSPSHFTNSAICYGVPENANYHSPLTVMPLKSDGSLCIMEALGRSQSQVMVSSSSSSPKLEDFLGGATMGTHDEYGSHEREAMALSLDSIYYNGQQNADPHQANRDHSLDLLSESFRQQTSSHPYYAALGYHGMFQTPLEVVESKENTNIVDVCSSQMPQNWVSSRDYSSSASQLLEQQMNNGGAAGGGGGGGDGGGSVGTVGCGELQSLSLSMSPGSQSSCVTAPSQISPTGTESVTMDAKKRGASKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYDVERIMASNTLLSGEHARRIKDNVVARTDVIEYNNDTNVSSQNNGEAAQVRNNENDSKWKMVSNNCDRKNDVNSGGSYKNSDFSMSLQDLVSGQQHVLDDSNKIGTHFSNPSSLVTSLSSSREASPDHKTGPSLLFPKLSMESKIATNGVGVSSWFPSQVTNQMRPTSSINLSHFPVFAAWNDA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00847 678 SMART rav1_2 432 496 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 SMART rav1_2 330 402 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 MobiDBLite consensus disorder prediction 265 298 - -
Tsu07g00847 678 Gene3D AP2/ERF domain 432 492 IPR036955 GO:0003700|GO:0006355
Tsu07g00847 678 Gene3D AP2/ERF domain 329 398 IPR036955 GO:0003700|GO:0006355
Tsu07g00847 678 MobiDBLite consensus disorder prediction 241 318 - -
Tsu07g00847 678 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 676 - -
Tsu07g00847 678 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 15 676 - -
Tsu07g00847 678 MobiDBLite consensus disorder prediction 605 629 - -
Tsu07g00847 678 Pfam AP2 domain 330 388 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 Pfam AP2 domain 433 482 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 ProSiteProfiles AP2/ERF domain profile. 432 490 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 SUPERFAMILY DNA-binding domain 329 398 IPR016177 GO:0003677
Tsu07g00847 678 MobiDBLite consensus disorder prediction 33 55 - -
Tsu07g00847 678 PRINTS Ethylene responsive element binding protein signature 472 492 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 PRINTS Ethylene responsive element binding protein signature 331 342 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 SUPERFAMILY DNA-binding domain 431 492 IPR016177 GO:0003677
Tsu07g00847 678 MobiDBLite consensus disorder prediction 37 55 - -
Tsu07g00847 678 MobiDBLite consensus disorder prediction 605 621 - -
Tsu07g00847 678 ProSiteProfiles AP2/ERF domain profile. 330 396 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 CDD AP2 431 492 IPR001471 GO:0003700|GO:0006355
Tsu07g00847 678 CDD AP2 329 396 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00847 Tsu-Chr7 6949503 6952986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00847 1 521 AP2-EREBP Transcription Factor Family AT4G37750 51.002 9.88e-159 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tsu07g00847 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00847 K09285 - gmx:100798179 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00847 07 6949503 6952986 Tsu07g00847 07 6949503 6952986 ECH
Tsu01g00482 01 4173223 4177510 Tsu07g00847 07 6949503 6952986 PCT