Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00840 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATCCAACAACATGGAACTGGTGGTAACTGGATCACTTTGCCACAAAAGATTGgCCTTAAGAGATGTGGCAAGAGTTGTCGGCTAAGATGGCTAAACTATCTTCGCCCTAACATCAAGCACGGTGATTTCACCGAAGAAGAAGACAACATCATTTGTAGCCTTTACATTAGAATTGGAAGCAGGTGGTCGGTCATTGCAGGCCAGTTACCGGGAAGAACTGATAATGATATAAAGAACTATTGGAACACGAAACTTAAAAAGAAGCTTTTCGGGAAGCATCGGAAAGAACAACAGTTGCAAGGACGGAGTAATAGATTATTAGCGGGTGTTAAGCATGATGAGAGAAATGGAAGAAAGAGTGAGATTTCTTCATCTGATTTGGTTTATGAAAATACTACTCAACATATGTTACATCCCTATTGGCCATCACATAACATACCGATGCATCTTCCACCATTGACATACTCAAATCAACAAGGTCATACTCCTCCTAGTTTCATCGATCAAGATTCTATTAGAAGATTGTTAATCAAGCTTGGAGGAAAATTCTCTGACGAAGATGATGATTGTTATCAACCAATCCTTAATCAAGAGTTCAATTTTCAATTCCCAGATATCGGAGTTCCTTCGACACAACAAATTCATGAAGAACATATTGGCTCTTCTTCCGGCTGCACGAGCTCTATAATGAACAACGGccaattagtacaatatttgtCTGATCAGTCTCAAAGTTATGATCATCAGTATTATGGTGAAGGACTAGCAGGACCAGAATTGGTGCAAGAACAAGGAAGTTTCACTGCAACAACGACatctagtaataataattattcgCAAAAGTTAAGCGGATTGGAATTCATCTACGGAGAGGACATGGACGGTACAATTTGTAGTAACTGGGGTGAGACTGAGCTTTAG 1005 0.393 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQHGTGGNWITLPQKIGLKRCGKSCRLRWLNYLRPNIKHGDFTEEEDNIICSLYIRIGSRWSVIAGQLPGRTDNDIKNYWNTKLKKKLFGKHRKEQQLQGRSNRLLAGVKHDERNGRKSEISSSDLVYENTTQHMLHPYWPSHNIPMHLPPLTYSNQQGHTPPSFIDQDSIRRLLIKLGGKFSDEDDDCYQPILNQEFNFQFPDIGVPSTQQIHEEHIGSSSGCTSSIMNNGQLVQYLSDQSQSYDHQYYGEGLAGPELVQEQGSFTATTTSSNNNYSQKLSGLEFIYGEDMDGTICSNWGETEL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00840 334 CDD SANT 71 113 IPR001005 -
Tsu07g00840 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu07g00840 334 CDD SANT 16 62 IPR001005 -
Tsu07g00840 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu07g00840 334 Gene3D - 70 135 - -
Tsu07g00840 334 PANTHER OS09G0431300 PROTEIN 1 322 - -
Tsu07g00840 334 SMART sant 13 64 IPR001005 -
Tsu07g00840 334 SMART sant 67 115 IPR001005 -
Tsu07g00840 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu07g00840 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu07g00840 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu07g00840 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu07g00840 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu07g00840 334 Gene3D - 7 68 - -
Tsu07g00840 334 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00840 Tsu-Chr7 6878667 6879916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00840 1 221 MYB Transcription Factor Family AT3G49690 59.729 4.20e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g00840 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00840 K09422 - gmx:778079 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00840 07 6878667 6879916 Tsu07g00840 07 6878667 6879916 ECH
Tsu01g00495 01 4300250 4301890 Tsu07g00840 07 6878667 6879916 PCT