Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01482 atgattttgctGAGTCAACAAATAGCAAAAccacttttcattttttcatataaatcaAAAAACCATTCATTCAATTACCATGTGCAACTTCATCAAGGTTTTACTTTCCTTAACAAATTTTCACAATTTCCTATTATGCCTATTTCCAATGGAAGATCTTTCAAGAGAAGGAATAATTTGAACAAATGTAGAACTTTTTCTGACGATGAATCTGGAAAATCTCCATTGCAAACTGACCCAGATAAGAAAGATGAGGAAGTGGGAGAAGGAAATGATGGTGTGGTGGTGGGTGGACAAGGTGAAAATCCTGATCTTCAGACACTTTTTAGAAGGTTCTGGAAAGTGGCAGCTCCTTATTGGAGTTCTGATGATAAGGTTCAAGCAAGATTGCAGCTTGCTGGTGTTTTTGCTCTCACTTTGGCTACCACTGGAATTAGTGTTGGTTTCAGTTTTCTAGGGAGAGACTTCTATAATGCACTTGCCAATAAGGATCAAGAGCAATTTACAAAGCAGCTACTTTACTACTTGGGTGGCTTTGCTGGAGGAATCCCGTTTTTCGTATTGAGAGACTATGCAAGAGAAACTCTTTCATTGAGATGGAGGTCTTGGATGACGAGGTATTACATGGATCGCTACTTGAAGGATCAGACATTCTATAAAATTCAATCGCAGTCAATTATTGATAATCCAGACCAGCGAATTGTTGATGATCTAAGCTCTTTCACCGGAACagccctttctttctctttggCACTCTTTAATGCTGCCATAGACTTTATCTCATTCAGTAACATCTTGTATGGAATATATCCTCCACTGTTTGTTGTTCTTCTCGTATACTCTATTGGTGGTACAGCTATCAGTGTTTTCCTTGGAAGGGGACTGGTGTCTCTAAATTTCTTGcaagagaaaaaagaagcagACTTTCGTTATGGACTTGTACGGGTTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAGAGTGAGATGCAACTTCTTCTGCAGCGCTTCAAAAGTGCTTTCGAAAATCTAACTCAATTGTTGATTTCTTCTAGAAATCTAGACTTCTTCACCAACGGTTACCGCTACGGgattcaaattcttcctgctgCTGTTGTTGCTCCCATGTATTTCTCTGGAAAAATCGAGTTTGGTGTCATTAACCAGTCAGTCTCTGCTTTTAATCACATCCTTGGTGACTTTTCTCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTCATTAATCGGTTAGGTgaatttgatgatattttggatAGAAGCAACTCTAAATCTCTCTCTGATTCTTTCGAAGACATAGATATTATTTACAAAGACTTTATAAGTTCATCTTCATTAGAATCTAATGGATTGACTCCGCAAGAAAAACATGAAACATTACTGGAGGTAGAAAATTTGATTCTGAAGACACCAAGTGATTCGACACTTATTACAGGTCTGTCATTGGCAATCAAGGAAAAAGATAATTTACTCATAACAGGACCAAGTGGAAGTGGCAAAACTTCTTTATTAAGAGTTATGGCTGGTCTATGGAAATTTGGTACTGGAAAGATCATATACTATGTAAAAGGTGGGGAAGACACCGAGAAATCTATCAGTTCAGATGTGAATACTCCTCCTGATATATCTGAAAACCGTGGAAAATCCATCAGCAGAAAATCCGGAATATTTTTCCTACCTCAAAAGCCATACATGGTTTTGGGTACTCTTCGGCAACAATTACTTTATCCAACTTGGGGTGATGATGTAGTTCCCACATCAGATAGTAATAAGCAAAAAAATGTGCTTCCTTTCTTGTCAAACTCAGATGATATGAATAGTGAACTTGTGAAGCCAAAAACAGATGAGCTGAAAAAGATCTTAGAGGATGTTCGTCTTGGCTACATATTGGATCGATTTGGTTTGGATTCAACACATGAATGGTCTAGTGTTCTTTCTCTGGGAGAGCAGCAACGTCTCGCGTTTGCTCGTCTTTTGCTTTCAAAACCTCAACTGGCTCTATTGGATGAATCAACAAGCGCACTTGATGAAGCCAATGAGgCTTATTTGTACGAAAAGATTGAAGCAGCAGGCATAACATACATCAGTGTTGGTCATCGATCGACCTTATCTGACTTCCACGACAGAATCCTACGCATATCTACAAATGATTCTGACAATGAACAGAAAAATTGGCGCGTTGAACCCACTAAACGTGAATCCTCTTTAAAAGCTTAG 2256 0.3675 MILLSQQIAKPLFIFSYKSKNHSFNYHVQLHQGFTFLNKFSQFPIMPISNGRSFKRRNNLNKCRTFSDDESGKSPLQTDPDKKDEEVGEGNDGVVVGGQGENPDLQTLFRRFWKVAAPYWSSDDKVQARLQLAGVFALTLATTGISVGFSFLGRDFYNALANKDQEQFTKQLLYYLGGFAGGIPFFVLRDYARETLSLRWRSWMTRYYMDRYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNAAIDFISFSNILYGIYPPLFVVLLVYSIGGTAISVFLGRGLVSLNFLQEKKEADFRYGLVRVRENAESIAFYGGEESEMQLLLQRFKSAFENLTQLLISSRNLDFFTNGYRYGIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVINRLGEFDDILDRSNSKSLSDSFEDIDIIYKDFISSSSLESNGLTPQEKHETLLEVENLILKTPSDSTLITGLSLAIKEKDNLLITGPSGSGKTSLLRVMAGLWKFGTGKIIYYVKGGEDTEKSISSDVNTPPDISENRGKSISRKSGIFFLPQKPYMVLGTLRQQLLYPTWGDDVVPTSDSNKQKNVLPFLSNSDDMNSELVKPKTDELKKILEDVRLGYILDRFGLDSTHEWSSVLSLGEQQRLAFARLLLSKPQLALLDESTSALDEANEAYLYEKIEAAGITYISVGHRSTLSDFHDRILRISTNDSDNEQKNWRVEPTKRESSLKA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01482 751 SMART AAA_5 499 737 IPR003593 -
Tsu06g01482 751 MobiDBLite consensus disorder prediction 64 90 - -
Tsu06g01482 751 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 474 751 IPR003439 GO:0005524
Tsu06g01482 751 Gene3D - 466 738 IPR027417 -
Tsu06g01482 751 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 83 743 - -
Tsu06g01482 751 CDD ABCD_peroxisomal_ALDP 474 727 - -
Tsu06g01482 751 Pfam ABC transporter 492 686 IPR003439 GO:0005524
Tsu06g01482 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 727 IPR027417 -
Tsu06g01482 751 Pfam ABC transporter transmembrane region 2 124 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01482 751 MobiDBLite consensus disorder prediction 64 101 - -
Tsu06g01482 751 Gene3D ABC transporter type 1, transmembrane domain 100 430 IPR036640 GO:0005524|GO:0016021
Tsu06g01482 751 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 133 416 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01482 751 ProSitePatterns ABC transporters family signature. 658 672 IPR017871 GO:0005524
Tsu06g01482 751 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 83 743 - -
Tsu06g01482 751 SUPERFAMILY ABC transporter transmembrane region 110 427 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01482 Tsu-Chr6 15169630 15177687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01482 104 749 Acyl Lipid Metabolism Gene Families AT1G54350 69.136 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01482 - - lja:Lj3g3v0937780.2 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01482 06 15169630 15177687 Tsu06g01482 06 15169630 15177687 ECH