Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01478 ATGGGGTTTCACAAAATAACGGTTCACAATCCCATCGTTGAAATGGATGGAGATGAAATGACAAGAGTAATTTGGAGAATGATAAAAGATAAGcttattttcccttttctggAGCTGGATATTAAGTATTTTGATCTTGGCCTTCCTCATCGAGATGCTACTGATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTAAAGTATAATGTAGCTATCAAATGTGCAACTATTACACCAGatgaaGGCCGTGTCAAGGAATTTAACCTAAAACAAATGTGGAAGAGCCCAAATGGGACAATCCGGAACATTTTAAATGGGACAGTTTTTAGAGAGCCAATCATCTGTAAAAACATTCCTCGGCTTGTTTCAGGCTGGACGAAGCCAATATgcattggaagacatgctttcgGAGACCAATATCGTGCAACTGATGCAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTGTTTGCACCTGGTGGAAATGAAGAAACTAAAGAGCTAGAGGTGTATAACTTTACTGGTGCTGGAGGTGTAGCTTTGGCCATGTATAATACCGACGAGTCCATTCGAGCTTTTGCTGAGGCTTCAATGAACATTGCTCACGAGAAAAAATGGCCTCTCTATCTTAGCACTAAAAATAccattctaaaaaaatatgatggaagATTCAAGGATATTTTCCAGGAAGTTTATGACACACAATGGAGTCAGAAATTTAAAGCTGCAGGAATATGGTATGAACATCGTCTTATAGATGATATGGTTGCGTATGCTCTTAAAAGTGATGGAGGTTATGTATGGGCTTGCAAGAATTATGATGGGGACGTGCAGAGTGATTTCATAGCGCAAGGATTTGGTTCTCTTGGATTGATGACATCAATACTGGTTTGCCCTGATGGGAAAACTATTGAAGCAGAGGCAGCCCATGGTACTGTTACCCGTCATTTTCGGGTTCACCAGAAGGGTGGTGAAACCAGTACTAACAGTATTGCTTCAATTTTTGCTTGGTCGCAAGGTCTTGCACATAGAGCAAAGTTGGATGGAAATGAAAGATTGCTGGACTTCACGGACAAACTTGAAGCGGCTTGCATTGGAACAGTTGAATTGGGAAAAATGACAAAGGATCTTGCGCTTCTTGTTCATGGACCCAAGGTTTCTAGGTCACACTATTTGAATACCGAGGAATTCATTGATGCTGTAGCTGAGGAGCTGAGAACAAGATTAACTACACAAGCAAAGCTGTAg 1251 0.3861 MGFHKITVHNPIVEMDGDEMTRVIWRMIKDKLIFPFLELDIKYFDLGLPHRDATDDRVTIESAEATLKYNVAIKCATITPDEGRVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFAPGGNEETKELEVYNFTGAGGVALAMYNTDESIRAFAEASMNIAHEKKWPLYLSTKNTILKKYDGRFKDIFQEVYDTQWSQKFKAAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMTSILVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNERLLDFTDKLEAACIGTVELGKMTKDLALLVHGPKVSRSHYLNTEEFIDAVAEELRTRLTTQAKL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01478 416 Gene3D Isopropylmalate Dehydrogenase 4 415 - -
Tsu06g01478 416 SMART Iso_dh_2 11 402 IPR024084 -
Tsu06g01478 416 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 411 IPR004790 GO:0004450|GO:0006102
Tsu06g01478 416 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 415 - -
Tsu06g01478 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 415 IPR004790 GO:0004450|GO:0006102
Tsu06g01478 416 Pfam Isocitrate/isopropylmalate dehydrogenase 8 402 IPR024084 -
Tsu06g01478 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Tsu06g01478 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 4 410 - -
Tsu06g01478 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01478 Tsu-Chr6 15100886 15106417 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01478 K00031 - gmx:606295 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01478 06 15100886 15106417 Tsu06g01478 06 15100886 15106417 ECH