Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00180 ATGAAGCGAGTGAAAAGTGAGAATGAAGATGATGTACTCTGCAATGATCAAACACAGTCACGGTTGAATGGTGAAGGTAACGGAGGAAGTGTTGGTGGTGGAGTTGTTCTCAAAAAAGGGCCATGGACATCTGCGGAAGATGCTATTTTGATTGACTATGTCAGGAAGCATGGAGAGGGAAACTGGAACGCTGTTCAGAAGCATTCAGGCCTGTCTCGATGTGGAAAAAGTTGCCGACTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGAGGAGGAGCAATTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCAGCGCACTTGCCTGGTCGTACGGATAATGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTTCTCGGGCTGGCTTGCCACTTTATCCTCCAGATGTGTCTTTGCGAAAAATGCAAGGGAATCAACGTGGCCAAGGCACTGGTAgaattgatgatggtgatagaGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATCCATGACGTAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCTATTGCAATTGTTCCCGAGAATCCTGACATTTCTGCTAATAGCATTCTGCTTAACGGTCTTGATTCTCCTCCATATTGTAGTTCTGTGCCATCAACACTACCTAACCATCACCATCTTCGAGAATCAACTATGTCTTTTCTTGGCTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATAAGATTGTACAATCATTCGGATTGCATTCCCCCCTTGATCCTGGTCTTTCCTCACACAACTCAGTGTATTACCGCCATTCCCTATCAAATGGCAATTCTTCTACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGGGGTACCTTTCCCTCATCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCTAGAGTCCGGTTCTTCTTCACCGCATAATAGTGGCACGCTCGAGGCCATAATTTATCAGAAGAAGACTATTCCAAATTCAAAGAACAATTATTCTGACAAGAGTTCACATTCATCTACTGCAACTCCTGTTGACAGAGCTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGAAGATTACAATGACCATGCATCTCCTTTTGGTGCAACCTCAATCTTGAATGAGTGTCCTGCTGTTAACTCCAATGCCAATTCATGGGATAAATTGACACCTTCTCAGAACTTTAGTGGAAACAATGTGAAATATGAGCCTGTTGACCAAGTTTGTACCCCAAACAGTGAAAATCCTCTTTCTATGTTGAACATCACTTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGATGCTAGGGACAACTTAACAGATTACAAGCATGTGACCAGTGGGACTTATTCTTCAAGTACAGGGGGTTACTTTATGCACATGGCTTAA 1602 0.4301 MKRVKSENEDDVLCNDQTQSRLNGEGNGGSVGGGVVLKKGPWTSAEDAILIDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTAEEEQLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRSRAGLPLYPPDVSLRKMQGNQRGQGTGRIDDGDRGHHDFLPKNNYEIHDVIFDNLKENQGILPIAIVPENPDISANSILLNGLDSPPYCSSVPSTLPNHHHLRESTMSFLGSSGTNKNWFYPFYHVQDHSSDKIVQSFGLHSPLDPGLSSHNSVYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGGTFPSSPLNESVDVFNQSPLPHGALESGSSSPHNSGTLEAIIYQKKTIPNSKNNYSDKSSHSSTATPVDRAESSALNMNETEWEDYNDHASPFGATSILNECPAVNSNANSWDKLTPSQNFSGNNVKYEPVDQVCTPNSENPLSMLNITWPDVLLASDWHEQCYGHEKNMTDARDNLTDYKHVTSGTYSSSTGGYFMHMA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00180 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Tsu03g00180 533 Gene3D - 38 91 - -
Tsu03g00180 533 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 510 - -
Tsu03g00180 533 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Tsu03g00180 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Tsu03g00180 533 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Tsu03g00180 533 MobiDBLite consensus disorder prediction 382 406 - -
Tsu03g00180 533 SMART sant 91 139 IPR001005 -
Tsu03g00180 533 SMART sant 38 88 IPR001005 -
Tsu03g00180 533 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Tsu03g00180 533 MobiDBLite consensus disorder prediction 1 31 - -
Tsu03g00180 533 MobiDBLite consensus disorder prediction 144 176 - -
Tsu03g00180 533 Gene3D - 94 140 - -
Tsu03g00180 533 MobiDBLite consensus disorder prediction 343 369 - -
Tsu03g00180 533 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 510 - -
Tsu03g00180 533 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Tsu03g00180 533 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Tsu03g00180 533 CDD SANT 41 86 IPR001005 -
Tsu03g00180 533 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00180 Tsu-Chr3 1465916 1469626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00180 30 510 MYB Transcription Factor Family AT3G11440 43.461 1.01e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00180 Myb_DNA-bind_6 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00180 K09422 - gmx:100805804 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00180 03 1465916 1469626 Tsu08g01497 08 17315278 17318322 PCT