Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03908 ATGATGAACCCTATTGAAACAAACGTGAACAACATCTACAACAACATATCACAAATGGGTTACTCATCAATTCCACCATCTTCAATCAAAACAACCGCAACAGAGACACTAATCCTACCACCTTATAACTCCATAACAACCGATTCTTTACCTCAAAAAACAGCTATGAACTCAGACAGCGGTTTAACTTATAATGTTCCTTTAAGAAAACGTTCTAGAGATTCTAGAGACtattcaaattcaatcaattttcCTTTCCCAAATTCTTATCTTTCTCCTACAACATTAACAACTCAACAaaacaaccacaacaacaacaacaaaagttgtgcctcttcatctttctcttttctTGGTGAAGATATTTCTGTTCAGATCCAACGACAACAACTTGATATTGATCAACTCATTGCACAACAAatgGAGAAAGTGAAATATGAGATTGAAGAAAAAAGGAAGAGACAAGCGATGAGGTTGATTCAAGCTATTGATATGAGTGTGACAAAGAGATTGAaagcaaaagaagaagaaattgagaAAATTGGGAAAATGAATTGGGCTTTAGAAGAAAGAGTTAAGTCACTTTGCATGGAAAATCAAATATGGCGTGATTTAGCACAAAGTAATGAAGCAACAGCCAATGCTTTAAGGTCCAATCTAGAACAACTTCTTGCACAACGCGGCGGCGATGAAAACGGAGAAATTTCTCCGGCAAATATGGCGGGTGCTTTAATGGATGATGCAGAGTCATGTTGTGATAGTAATGAGAGTATTAATGATGATGGAAATGCTGTGGATCAATGGAGAAATTTAggagataataataatgggaAGAAAATTGAAGTGATGAAGGTTATGGGAAATTCAAGTGGTGGTGAAAGTGGAAGCAATTTTGTGAATAGCATGAAACTGTGCAGTAACTGTGGGAAAGATGAATCTTGTGTGTTGATTTTGCCTTGTAGACATCTTTGTTTATGTGGTGTTTGTGGTTCTTCTCTTCACATTTGTCCTATTTGTAAATCTTTCAAAACTGCTAGTATCCATGTTAACATGTCTTGA 1059 0.3239 MMNPIETNVNNIYNNISQMGYSSIPPSSIKTTATETLILPPYNSITTDSLPQKTAMNSDSGLTYNVPLRKRSRDSRDYSNSINFPFPNSYLSPTTLTTQQNNHNNNNKSCASSSFSFLGEDISVQIQRQQLDIDQLIAQQMEKVKYEIEEKRKRQAMRLIQAIDMSVTKRLKAKEEEIEKIGKMNWALEERVKSLCMENQIWRDLAQSNEATANALRSNLEQLLAQRGGDENGEISPANMAGALMDDAESCCDSNESINDDGNAVDQWRNLGDNNNGKKIEVMKVMGNSSGGESGSNFVNSMKLCSNCGKDESCVLILPCRHLCLCGVCGSSLHICPICKSFKTASIHVNMS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03908 352 Coils Coil 206 226 - -
Tsu02g03908 352 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 10 351 IPR017066 -
Tsu02g03908 352 ProSiteProfiles Zinc finger RING-type profile. 305 340 IPR001841 -
Tsu02g03908 352 Pfam Zinc finger, C3HC4 type (RING finger) 303 341 - -
Tsu02g03908 352 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 10 351 - -
Tsu02g03908 352 PIRSF SBP1_RNase_bind 2 352 IPR017066 -
Tsu02g03908 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 352 IPR013083 -
Tsu02g03908 352 Coils Coil 171 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03908 Tsu-Chr2 45134213 45136125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03908 304 341 Miscellaneous Gene Families AT2G21380 39.474 3.66e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03908 02 45134213 45136125 Tsu02g03908 02 45134213 45136125 ECH
Tsu02g03908 02 45134213 45136125 Tsu08g01700 08 20415642 20416978 PCT