Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03905 ATGGATGTTTGGGAGATGGACCCAGATATGATATGTTATTTTGATCTCATTAACATGGTAAAACATTGTGGCAAGTATCATAGTGTTGAAAAAGTTCAATGGATGAAAACTGATTATGGAGATAACTTTGATTTTGGGTTGAGACCTTTGGAAAATGACAGTCACATAATTAAGATGATTGAGGGTGCAAGGAAGAATGGAAATGAGGTAGAGATATATTTCCAACATTCAGTAGTTGAAAATCCTGAGTTTGTAGAGTTTAATGAAGACGAGATGGCAATGCTTGAGCAAATTATTAGATCTGCAACCAATTCCAATGGTGGCAGTCAATGTGTCGATCCACCTATTCAAGAAGATGGAGCAATAGATGAAGAGatttatgaaaatgattttcCTACAGTTGAAGAACTTATCCAACAAGAGCAACAAATGGTTGAAGAGGAAGTAATAGTTGAAAATGTAGTTTCGAAAAAAAAGGGGAAGGCGGAGAGGAAAAGTAATAAAGTGAacacaaaaaaaagtaagaaaaaaaataagaaaaaaagtaagGAAGTGTTACCACCAAGTGAGAGTGATTCATCAAGTGGTGGTGATGATTATCATGCTGAGTTTAGAGAGGCAGCAGGACATAGAGAGACATATTCACAAAACGTACAAGGGGAGCCAAGTGGAGAGATTAGACCTACcattaatgatgatgaagatgatgatttatATCACTCAGAGGAATTGAAGAGTCCAATAAGTactgatgatgaggatgatggaAAACATGTATTTCCTCAATTTAATGAATCTGCTGTGTTTGGAGAAGTTCAGTTGGAGAAAGGAATGGAATTTCCTACTTTGGCGGTGTTTAAACATGCAGAGATTTATGATTATGTCAAACGTGAGTTCAATCTGATGCTTGATGACTCTAAGATCAATAGAGCAGTGAGGGAAGCGAGGGAATTGGTCGAAGGTTATCATGGTGGTCAACTACTATCTGTTGTGGGACAAGATGCAAATAATCATATATTTGTTGTTGCCTATGCAATTGTGGATGTTGAAAACAAAGACAACTGGAAATGGTTTCTAACATTGTTGCATGAAGACTTAGGTGACTACAAACAACATGGGTGGAACTTTATGTCAGATATGCAAAAGGGTCTTATACCTGCCATGCAGGAAGTCATGCCTGGTGTGCCACATAGATATTGTGCTATGCATCTGTGGAGGAACTTTACAAAAAATTGGATGGATAAAGAACTTAGAGGTGTGGTGTGGGATTGTGCCAGGTCCACCACTGTTGCACAGTTCAATCGCCATATGGAAAAAGTGAAGAGATTGAACAAAAAAGCATGGGAATATCTTAATAAGTGGCCTAAGGAAGCTTGGACAAGGGCATATTTCAAGGAAAATTCAAAAGTTGACAGTATAACTAACAACAATTGTGAGGTTTTCAATGCAAAAATCCTAAATTACAGAGGGAAACCAATTTTAACTTTAGCTGAAGAGATTAGATGCTATGTCATGAGAACAATGAGTTCAAAAAAGTTCAAATTTGCCGATAAAATTGGACCTCTTTGTCCAGTGCAACAGAGTCGATTGGAGAATGAGAAAATTCAAAGCAATAGTTGGACTCCTTGTTGGACAGGCCCCCCTCGTCTAAGATATCAAGTTCAAAGTGGCAGTACAAAAGTTGACGTGGATCTTGATACAGGGACCTCGAAGCATCAGCGAAGACGCAGCGAAGACGCAGCGAAGACGCAGCGAACGAAGTCAGAGAGGAAAAGGGCATTAGCGAAATCGCAGCGAATCAGTGGCGAACGTGTTCGCTACAGCGAATCAATAGCGAAGCATCAGCGAACGAAGTCAGAGAGGAAAAGCCGTCTCACTGCTCATTCTGTAGGTGGAGATCGGCATTCACTTTCATTTCTAATCAAATTCTGTTTTCCGTGTGGATTATATACAAGACTAGTCAAGATGgTGAAGTTTACAGCTGATGAGTTACGTCGTATTATGGACTACAAACACAATATTCGTAATATGTCTGTCATTGCTCATGTTGATCACGGAAAATCAACTTTGACAGATTCTCTTGTGGCGGCTGCTGGCATTATAGCACAAGAGGTTGCAGGAGATGTTAGGATGACAGATACCCGTCAAGACGAAGCTGAGCGTGGTATAACGATAAAGTCAACTGGTATCTCTCTCTACTATGAGATGAGTGATGATGATTTGAAGAATTTCAAAGGTGAACGTGAAGGGAACAAGTACCTTATAAACCTGATCGACTCTCCTGGGCATGTCGATTTCTCATCTGAGGTCACGGCTGCACTTCGCATCACCGATGGAGCACTTGTGGTGGTGGATTGTGTCGAAGGGGTTTGTGTACAAACACAAACAGTGTTGAGACAAGCACTAGGAGAAAGGATTAAACCTGTTTTAACTGTAAACAAAATGGATAGATGTTTTCTTGAGCTTCAACTCGATGCTGAAGAGGCCTACTTGACGATTCAGAGGGTCATTGAGAGTGCCAATGTCATCATGGCAACCTATGAAGATCCATTGCTTGGTGATGTTCAAGTGTATCCTGAGAAAGGAACTGTTGCTTTCTCTGCTGGTTTGCATGGTTGGGCTTTCACTCTGACCAACTTTGCAAAGATGTATGCCACCAAATTTGGTGTTAACGAGTCAAAGATGATGGAGAGGCTCTGGGGTGAAAATTTCTTTGATCCTGCCACTAAGAAATGGACCACCAAGAACACTGGTTCAGCTACGTGCAAGCGTGGCTTTGTTCAGTTCTGTTATGAGCCAATCAAGCATATTATTGAACTTTGTATGACTGATCAGAAGGATAAACTGTGGCTGATGCTGCAGAAGCTCAAGGTGAATTTGAAGTCGGAGGAGAAAGAATTAACAGGAAAGGCTTTGATGAAGCGTGTTATGCAAAGCTGGCTCCCGGCTAGCAGTGCCCTTTTAGAGATGATGATTTTCCATCTTCCTTCTCCTTCCAAGGCTCAAAAATACCGTGTCGATAATTTGTATGAGGGTCCCCTTGATGATCCTTATGCTTCTGCAATCCGAAATTGTGATCCTGAAGGACCTTTAATGCTTTACGTTTCAAAGATGATTCCTGCCTCTGATAAGGGTAGGTTTTATGCTTTTGGTCGTGTGTTTTCAGGTAAGGTTTCAACTGGTATGAAGGTCAGGATTATGGGACCAAATTACATCCCCGGGGAGAAGAAAGATCTGTATGTGAAAAGTGTTCAGAGAACGGTTATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTCCCTTGTGGTAATACAGTTGCCATGGTGGGTTTGGATCAATTCATTACCAAGAATGCTACTTTAACAAATGAGAAAGAAATCGACGCACACCCTATTCGAGCTATGAAATTTTCAGTGTCACCTGTGGTAAGTGTAGCAGTTACATGTAAGGTAGCATCGGAAGTTCCCAAGCTTGTCGATGGCCTTAAACGGTTAGCGAAGTCAGATCCCATGGTGGTGTGCACAATTTCAGAGACTGGAGAACATATCGTAGCTGCTGCTGGTGAGTTACACCTTGAAATCTGCTTGAAGGATTTGCAGGACGATTTCATGAATGGAGCCGAGATTTCAATATCCGACCCTATTGTCTCTTTCCGTGAGACTGTGCTTGAGAAATCTAGCCATATTGTGATGAGCAAGTCACCAAACAGACACAACCGCTTATATATGGAAGCAACGCCAATGGAGGAACGGCTTGCAAAGGCCATCGATGATGGGAAGATTGGATTGAGAGATGACCCTAAAAACCGTTCTAAAATACTGTCTGAAGAGTTTGGTTGGGACAAGGATCTCACCAAGAAAATATGGTGTTTCGGCCCCGAGACAACAGGTCCCAACATGGTGGTAGATACATGTAAAGGCGTACAATATCTGAATGAAATCAAGGATTCTGTTGTTTCTGGATTCCAGACGGCATCAAAACAAGGTCCAATGGCCGATGAGAGCATGTGGGGGGTTTGTTTTGAGATTTGCGACGTTGTTCTTCATGCCGATGCCATTCACAGAGGAGGTGGCCAGATCAGTCCAACAGCTAGAAGGGTGTGCTATGCAGCCATGCTTACAGCAAAGCCGCGACTTCTAGAACCGGTGTATCTGGTGGAAATACAAGCACCTGAACATGCTCTTGGAGGTATATATAGTGTTCTTAATCAGAGAAGAGGGCATGTTTTTGAGGCAATCCAGAGGCCTAACACTCCACTTTACAATGTCAAGGCACATTTACCTGTTATTGAGTCATTTAAATTCAATGAAGCACTGAGGGCTCAAACAGGAGGACAGGCTTTCCCTCAGTTGGTATTTGACCATTGGGATATGATGCCATCTGATCCACTGGAACCTGGGACTCCGGCTGCTGCACGTGTTAGGGAGATAAGAATAAAGAAAGGTTTGAAGGAACAAATGGCGCCTCTCACCGACTTTGAGGACAGGCTTTGA 4497 0.4132 MDVWEMDPDMICYFDLINMVKHCGKYHSVEKVQWMKTDYGDNFDFGLRPLENDSHIIKMIEGARKNGNEVEIYFQHSVVENPEFVEFNEDEMAMLEQIIRSATNSNGGSQCVDPPIQEDGAIDEEIYENDFPTVEELIQQEQQMVEEEVIVENVVSKKKGKAERKSNKVNTKKSKKKNKKKSKEVLPPSESDSSSGGDDYHAEFREAAGHRETYSQNVQGEPSGEIRPTINDDEDDDLYHSEELKSPISTDDEDDGKHVFPQFNESAVFGEVQLEKGMEFPTLAVFKHAEIYDYVKREFNLMLDDSKINRAVREARELVEGYHGGQLLSVVGQDANNHIFVVAYAIVDVENKDNWKWFLTLLHEDLGDYKQHGWNFMSDMQKGLIPAMQEVMPGVPHRYCAMHLWRNFTKNWMDKELRGVVWDCARSTTVAQFNRHMEKVKRLNKKAWEYLNKWPKEAWTRAYFKENSKVDSITNNNCEVFNAKILNYRGKPILTLAEEIRCYVMRTMSSKKFKFADKIGPLCPVQQSRLENEKIQSNSWTPCWTGPPRLRYQVQSGSTKVDVDLDTGTSKHQRRRSEDAAKTQRTKSERKRALAKSQRISGERVRYSESIAKHQRTKSERKSRLTAHSVGGDRHSLSFLIKFCFPCGLYTRLVKMVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDDDLKNFKGEREGNKYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTQTVLRQALGERIKPVLTVNKMDRCFLELQLDAEEAYLTIQRVIESANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYATKFGVNESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKHIIELCMTDQKDKLWLMLQKLKVNLKSEEKELTGKALMKRVMQSWLPASSALLEMMIFHLPSPSKAQKYRVDNLYEGPLDDPYASAIRNCDPEGPLMLYVSKMIPASDKGRFYAFGRVFSGKVSTGMKVRIMGPNYIPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEIDAHPIRAMKFSVSPVVSVAVTCKVASEVPKLVDGLKRLAKSDPMVVCTISETGEHIVAAAGELHLEICLKDLQDDFMNGAEISISDPIVSFRETVLEKSSHIVMSKSPNRHNRLYMEATPMEERLAKAIDDGKIGLRDDPKNRSKILSEEFGWDKDLTKKIWCFGPETTGPNMVVDTCKGVQYLNEIKDSVVSGFQTASKQGPMADESMWGVCFEICDVVLHADAIHRGGGQISPTARRVCYAAMLTAKPRLLEPVYLVEIQAPEHALGGIYSVLNQRRGHVFEAIQRPNTPLYNVKAHLPVIESFKFNEALRAQTGGQAFPQLVFDHWDMMPSDPLEPGTPAAARVREIRIKKGLKEQMAPLTDFEDRL 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03905 1498 TIGRFAM small_GTP: small GTP-binding protein domain 675 823 IPR005225 GO:0005525
Tsu02g03905 1498 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 656 1497 - -
Tsu02g03905 1498 Pfam Elongation factor G C-terminus 1379 1465 IPR000640 -
Tsu02g03905 1498 PRINTS GTP-binding elongation factor signature 808 817 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 PRINTS GTP-binding elongation factor signature 676 689 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 PRINTS GTP-binding elongation factor signature 756 766 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 PRINTS GTP-binding elongation factor signature 772 783 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 PRINTS GTP-binding elongation factor signature 720 728 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 Pfam Elongation factor Tu GTP binding domain 672 997 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 SMART EFG_IV_2 1261 1377 IPR005517 GO:0005525
Tsu02g03905 1498 CDD EF2_snRNP_III 1150 1214 - -
Tsu02g03905 1498 SUPERFAMILY EF-G C-terminal domain-like 1139 1215 IPR035647 -
Tsu02g03905 1498 Gene3D - 1224 1377 IPR014721 -
Tsu02g03905 1498 CDD eEF2_snRNP_like_C 1382 1461 - -
Tsu02g03905 1498 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 672 999 IPR000795 GO:0003924|GO:0005525
Tsu02g03905 1498 Gene3D - 658 892 IPR027417 -
Tsu02g03905 1498 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 713 728 IPR031157 -
Tsu02g03905 1498 CDD EF2 675 885 - -
Tsu02g03905 1498 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 656 1497 - -
Tsu02g03905 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 996 IPR027417 -
Tsu02g03905 1498 SMART EFG_C_a 1379 1468 IPR000640 -
Tsu02g03905 1498 SUPERFAMILY EF-G C-terminal domain-like 1382 1485 IPR035647 -
Tsu02g03905 1498 Pfam Elongation factor Tu domain 2 1048 1122 IPR004161 GO:0005525
Tsu02g03905 1498 MobiDBLite consensus disorder prediction 160 237 - -
Tsu02g03905 1498 MobiDBLite consensus disorder prediction 161 182 - -
Tsu02g03905 1498 SUPERFAMILY Ribosomal protein S5 domain 2-like 1217 1381 IPR020568 -
Tsu02g03905 1498 CDD aeEF2_snRNP_like_IV 1214 1386 - -
Tsu02g03905 1498 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1141 1218 - -
Tsu02g03905 1498 MobiDBLite consensus disorder prediction 561 627 - -
Tsu02g03905 1498 ProSitePatterns Transposases, Mutator family, signature. 379 403 IPR001207 GO:0003677|GO:0004803|GO:0006313
Tsu02g03905 1498 Pfam Elongation factor G, domain IV 1265 1377 IPR005517 GO:0005525
Tsu02g03905 1498 MobiDBLite consensus disorder prediction 196 210 - -
Tsu02g03905 1498 Pfam MULE transposase domain 324 407 IPR018289 -
Tsu02g03905 1498 CDD EF2_II 1030 1125 - -
Tsu02g03905 1498 Gene3D Translation factors 998 1139 - -
Tsu02g03905 1498 MobiDBLite consensus disorder prediction 565 627 - -
Tsu02g03905 1498 SUPERFAMILY Translation proteins 998 1131 IPR009000 -
Tsu02g03905 1498 Pfam Elongation Factor G, domain III 1142 1204 IPR041095 -
Tsu02g03905 1498 Gene3D - 1378 1498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03905 Tsu-Chr2 45005109 45095866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03905 656 1498 Eukaryotic Initiation Factors Gene Family AT1G56070 84.816 0.0 1518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03905 02 45005109 45095866 Tsu02g03905 02 45005109 45095866 ECH