Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00504 ATGGAGAACTCACCACCCACTGATAGGATCAGCAATTTACCTGATGAGTTACTCTCTCATATACTCTCTTTTCTCCCAACTAAACTTGCTTTCACCACAACACTTCTCTCCAAAAGGTTTACCCCACTCTTCAAATTACTCACAACTCTCCACTTCGATGATGATTCCGTTCGCGACGAAGAGTCCTTGCTTCACTTATGCCGTTGGTTTGAAACTGTAAAACTACATCCTGTGGAGAATCTCCAAATCCATATTTCGCATATCCTCTTGCCACCAAGTATTTTCATATTTCCAAATCTTGTGCTTCTCGAATTGAATTTTGTAGACGTCACTGCTAGTAATATCTCTGTTGATCTTCCCTCTCTTAAGACCCTTCGTTTGTATGCCGTACAGTTTAAAAGTAAACGGAATTTTAACAACATTGTTTGTGGATGTCCCGTTTTGGAACACTTGCTTGCTTCTCACGTTTACTATTATACGGAACAAGCTGAAGGCATTACTGTTAGTACGGAAGAGTTCAAATCCTTATCCAAGTTGACCACAGCCGATATAAATGCATTTGATGTTCCCTTCGGAGCAATTTCTAATGTCAAGACTTTAAGATTTTGGATGAAGAAAAGGCTTCAAGAGATCGATTCCTATCACAGAGGCTTTCCTGTGTTCCGAAACTTAATCAACCTTAACATAGGCTTTTCTAAATTTCATCACTGGGATGATGTAGTAGGAGTTCTCCAGTATTGTcccaagcttcaaattctttctatttttaagGTGGCAATCAACGAACATTTGTCTATAAACTGGAAGTACCCAAATTCTGTTCTTGAATGCATTTCATCTCACCTTAGATCATGTACTATAAACTATGAAGGATGGGAAGATGAACTTCGATTTACAAAATACATTTTACAGAATGCGTGTCTTTTACAGGTTGGTAATGATTCAGTAACTATGATTCCAGAGGGATTGGAGTCAGAATTTTGTTATCAATTTTATGGTACTAACAATGATGGCTCGTTCTCTAGACAGAAGATTTTGGAAGTTGAGAGAAAATTACAGCATCTAAGAAAACACTCACTAAAAACCATTCAGAGTGAAGATGGGGATACTATTGATTGCATCGACATTAACAAGCAACCTGCCTTTGATCATCCTGCCTTAAAAGATCACAAAATTCAGATGACTCCAAGTTACAATTCAGCTAAAAAGGACACAACTGAAGTTACCAGAACTAAAAGCAAAACATATGTGACTTCCCAACAAGTATGGCGAAAAAGTGGAAGCTGTCCAAAGGGAACAATACCTGTCCGAAGAATACGAAAGAGAGAACTTCTCAAGGCTCATTCAATTGATGAATATGGAAGGAAGAAACCAGGCATCTTAAACAGAAAAGTCAGTGATAAGCTGAATCAAAATGTTGATTCCTTtgtacaacaacaaaatcactCTAAGGCAATAGTATTCGCATATGGATTCAGCTACATGGGGGGTAAAGGAGAAATTCGAGTTGCCTATCCTTTTGTTGAAAAGGATGATGAATACAGCACTGCTCAGGTCTCTCTCATAAATGGATCTTACGATTATTATGAGCTTGTTGAATCTGGATGGGCGGTCAATCCTAGTGTATACGGAGATAGGAACACTCGGTTATTCGTATATTGGACGGCTGATGGTTCACATAGAACAGGTTGCTTTGATTTGACTTGTCCTGGGTTTATTCAAACTAGCAATGAAATTGCCTTAGGTGCTACAATTTCTCCAATTCCAGTTCCTGGTGGTCTACCATACCAAATAACTATTTATATCCAGAAGGACGTAATGACTAATAATTGGTGGGTGCAATATGGTGAGGAGAAGACCAACATAGGTTATTGGCCTCCGGAGCTTTTCATAGGACTGCGCTCCAATGCTGAATCAGTGGAGTGGGGTGGTGAAGTTTATAGCACAACTGTTGGACATACTCCTCATACACAAACAGCAATGGGTAGTGGTTATTTTGGTTCGTGGGGGTATCCAGTTGCGGCTTCCATATTAAAGATGAGAGTTCACGATAATTCTGCAATGTGGAAGATCCCTGAATGGGTTGATAAACTCTCTGATGAATATAATTGTTACAACGTTGAATATATAGCAGATTATGTTGACGACCCATTATTCTATTATGGAGGACCTGGTAGAAATATTATGTGTCCTTAA 2196 0.3816 MENSPPTDRISNLPDELLSHILSFLPTKLAFTTTLLSKRFTPLFKLLTTLHFDDDSVRDEESLLHLCRWFETVKLHPVENLQIHISHILLPPSIFIFPNLVLLELNFVDVTASNISVDLPSLKTLRLYAVQFKSKRNFNNIVCGCPVLEHLLASHVYYYTEQAEGITVSTEEFKSLSKLTTADINAFDVPFGAISNVKTLRFWMKKRLQEIDSYHRGFPVFRNLINLNIGFSKFHHWDDVVGVLQYCPKLQILSIFKVAINEHLSINWKYPNSVLECISSHLRSCTINYEGWEDELRFTKYILQNACLLQVGNDSVTMIPEGLESEFCYQFYGTNNDGSFSRQKILEVERKLQHLRKHSLKTIQSEDGDTIDCIDINKQPAFDHPALKDHKIQMTPSYNSAKKDTTEVTRTKSKTYVTSQQVWRKSGSCPKGTIPVRRIRKRELLKAHSIDEYGRKKPGILNRKVSDKLNQNVDSFVQQQNHSKAIVFAYGFSYMGGKGEIRVAYPFVEKDDEYSTAQVSLINGSYDYYELVESGWAVNPSVYGDRNTRLFVYWTADGSHRTGCFDLTCPGFIQTSNEIALGATISPIPVPGGLPYQITIYIQKDVMTNNWWVQYGEEKTNIGYWPPELFIGLRSNAESVEWGGEVYSTTVGHTPHTQTAMGSGYFGSWGYPVAASILKMRVHDNSAMWKIPEWVDKLSDEYNCYNVEYIADYVDDPLFYYGGPGRNIMCP 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00504 731 Gene3D Ribonuclease Inhibitor 11 375 IPR032675 -
Tsu01g00504 731 Gene3D - 505 622 - -
Tsu01g00504 731 Pfam Neprosin 512 724 IPR004314 -
Tsu01g00504 731 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 342 728 - -
Tsu01g00504 731 SUPERFAMILY RNI-like 81 262 - -
Tsu01g00504 731 Pfam FBD 271 310 IPR006566 -
Tsu01g00504 731 Pfam Neprosin activation peptide 362 485 IPR025521 -
Tsu01g00504 731 PANTHER ASLB (DUF239)-RELATED 342 728 - -
Tsu01g00504 731 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Tsu01g00504 731 ProSiteProfiles F-box domain profile. 7 55 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00504 Tsu-Chr1 4409809 4416089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00504 8 183 EF-hand Containing Proteins AT5G41840 29.185 6.31e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00504 - - gmx:100816380 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00504 01 4409809 4416089 Tsu01g00504 01 4409809 4416089 ECH
Tsu01g00504 01 4409809 4416089 Tsu07g00831 07 6785159 6787626 PCT